GgaEX0002709 @ galGal4
Exon Skipping
Gene
ENSGALG00000002200 | ACSM3
Description
acyl-CoA synthetase medium-chain family member 3 [Source:HGNC Symbol;Acc:HGNC:10522]
Coordinates
chr14:14916080-14918838:+
Coord C1 exon
chr14:14916080-14916223
Coord A exon
chr14:14917111-14917264
Coord C2 exon
chr14:14918715-14918838
Length
154 bp
Sequences
Splice sites
3' ss Seq
GTGCTTCCTTCTGCTATCAGGTA
3' ss Score
9.74
5' ss Seq
GAGGTATGT
5' ss Score
9.81
Exon sequences
Seq C1 exon
AACTGCTCCATCTGATCACCGGTGTGTAACCACAAAGTCTCAACACCCCGTGGCCATCTATTTTACTAGTGGGACAACGGGAGCTCCAAAAATGACAGAACATTCCCACTGCAGCTATGGCATTGGCCTCACAGTGAGTGGAAG
Seq A exon
GTACTGGCTGAACCTGACCTCTTCAGATATATATTGGAATACCTCAGACACGGGCTGGGCCAAGGCAGCATGGAGCATTTTTTCAGCATGGAGTCAAGGGGCATGTGTATTTGTACATAAGATGCCACAGTTCAGCCCTCCTGCTGTCTTTGAG
Seq C2 exon
CTGCACATCCAACAGCCTGCGGCACTGTGTGAGCGCCGGGGAGCCAATCAACCCCGAGGTGATGGCCAAGTGGAAAGCATGGACAGGGCTGGATATCCATGAATGCTACGGACAAACAGAAACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002200_MULTIEX1-1/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(11.5=100)
A:
PF0050123=AMP-binding=FE(12.3=100)
C2:
PF0050123=AMP-binding=FE(9.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTGCTCCATCTGATCACCG
R:
TGGATATCCAGCCCTGTCCAT
Band lengths:
243-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]