GgaEX0002709 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr14:15630158-15632112:+
Coord C1 exon
chr14:15630158-15630301
Coord A exon
chr14:15631189-15631342
Coord C2 exon
chr14:15632033-15632112
Length
154 bp
Sequences
Splice sites
3' ss Seq
GTGCTTCCTTCTGCTATCAGGTA
3' ss Score
9.74
5' ss Seq
GAGGTATGT
5' ss Score
9.81
Exon sequences
Seq C1 exon
AACTGCTCCATCTGATCACCGGTGTGTAACCACAAAGTCTCAACACCCCGTGGCCATCTATTTTACTAGTGGGACAACGGGAGCTCCAAAAATGACAGAACATTCCCACTGCAGCTATGGCATTGGCCTCACAGTGAGTGGAAG
Seq A exon
GTACTGGCTGAACCTGACCTCTTCAGATATATATTGGAATACCTCAGACACGGGCTGGGCCAAGGCAGCATGGAGCATTTTTTCAGCATGGAGTCAAGGGGCATGTGTATTTGTACATAAGATGCCACAGTTCAGCCCTCCTGCTGTCTTTGAG
Seq C2 exon
AGCCTGTCAAGATATCCCATAACTGTCTTCTGCTCAGCCCCAACTGCTTACCGAATGCTCGTGCAGCACCAGCTGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002200-'3-4,'3-3,4-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(11.5=100)
A:
PF0050123=AMP-binding=FE(12.3=100)
C2:
PF0050123=AMP-binding=FE(6.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTGCTCCATCTGATCACCG
R:
AGCATTCGGTAAGCAGTTGGG
Band lengths:
203-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]