DreEX0010855 @ danRer10
Exon Skipping
Gene
ENSDARG00000004880 | acsm3
Description
acyl-CoA synthetase medium-chain family member 3 [Source:ZFIN;Acc:ZDB-GENE-080220-22]
Coordinates
chr2:44881617-44886216:-
Coord C1 exon
chr2:44886073-44886216
Coord A exon
chr2:44882657-44882813
Coord C2 exon
chr2:44881617-44881696
Length
157 bp
Sequences
Splice sites
3' ss Seq
GATCTGTGTGAATTGTTCAGGTA
3' ss Score
6.42
5' ss Seq
AAGGTACTG
5' ss Score
8.56
Exon sequences
Seq C1 exon
AAGAGTATCAGATGACCATGTTTGTGTGGACACCAGCAGTGAGGAGCCCATGACCATCTTCTTCACCAGTGGCACAACGGGCTCCCCAAAAATGACCCAACACAGCCACTGTAGTTACGGTTTGGGGCTCACCGTGAACGGCAG
Seq A exon
GTACTGGCTGGATCTGACTGAGCAGGATGTATTCTGGAACACCTCTGACACGGGCTGGGCGAAATCAGCGTGGAGCAGTGTGTTTGCTCCGTGGATTCAGGGAGCTTGTGTGTTTGTTCACCACATGCCACGCTTTGACACAAACACAGTTCTTAAG
Seq C2 exon
ACTCTGAGCCACTATCCCATCACCACCTTCTGCACAGCACCGACCGCCTATCGAATGCTTGTACAGGATGACTTGTCTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000004880-'4-5,'4-4,5-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(11.6=100)
A:
PF0050123=AMP-binding=FE(12.5=100)
C2:
PF0050123=AMP-binding=FE(6.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTATCAGATGACCATGTTTGTGTGG
R:
AGACAAGTCATCCTGTACAAGCA
Band lengths:
218-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]