HsaEX6042618 @ hg38
Exon Skipping
Gene
ENSG00000005187 | ACSM3
Description
acyl-CoA synthetase medium-chain family member 3 [Source:HGNC Symbol;Acc:HGNC:10522]
Coordinates
chr16:20780714-20781787:+
Coord C1 exon
chr16:20780714-20780857
Coord A exon
chr16:20780974-20781130
Coord C2 exon
chr16:20781708-20781787
Length
157 bp
Sequences
Splice sites
3' ss Seq
GCTACTCTTTGTTTTCCCAGGTT
3' ss Score
7.75
5' ss Seq
CAAGTAAGC
5' ss Score
7.47
Exon sequences
Seq C1 exon
ACATGCCAGTGACAGCCACACCTGTGTGAAGACAAAACACAATGAGATCATGGCCATATTCTTTACCAGTGGAACAAGTGGATATCCGAAAATGACTGCACACACCCACAGCAGTTTTGGTTTAGGATTATCTGTAAATGGAAG
Seq A exon
GTTCTGGCTAGATTTGACACCCTCAGATGTGATGTGGAATACCTCAGATACGGGCTGGGCAAAGTCTGCATGGAGTAGTGTTTTTTCTCCGTGGATCCAGGGAGCATGTGTATTCACACACCATTTACCCCGTTTTGAGCCGACTTCTATCTTGCAA
Seq C2 exon
ACACTCTCCAAGTACCCCATCACAGTCTTCTGTTCAGCACCAACTGTATACCGAATGCTTGTACAGAATGATATAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000005187-'40-42,'40-40,41-42=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(10.4=100),PF139001=GVQW=PD(36.8=14.6)
A:
PF0050123=AMP-binding=FE(12.6=100)
C2:
PF0050123=AMP-binding=FE(12.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATGCCAGTGACAGCCAC
R:
ATATCATTCTGTACAAGCATTCGGT
Band lengths:
218-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains