MmuEX6013612 @ mm9
Exon Skipping
Gene
ENSMUSG00000030935 | Acsm3
Description
acyl-CoA synthetase medium-chain family member 3 [Source:MGI Symbol;Acc:MGI:99538]
Coordinates
chr7:126918027-126919076:+
Coord C1 exon
chr7:126918027-126918170
Coord A exon
chr7:126918605-126918761
Coord C2 exon
chr7:126918997-126919076
Length
157 bp
Sequences
Splice sites
3' ss Seq
CTGTGATATTTATATTCCAGGTT
3' ss Score
8.49
5' ss Seq
CAAGTAAGG
5' ss Score
7.66
Exon sequences
Seq C1 exon
ATATGCCAGTGACAGCCACACTTGTGTGGACACAAAACACGACGAGATGATGGCCATCTACTTCACCAGTGGGACAACTGGGCCTCCTAAGATGATTGGACACACCCACAGCAGCTTTGGTTTAGGATTGTCTGTCAATGGAAG
Seq A exon
GTTCTGGCTGGATTTGATAGCCTCCGATGTGATGTGGAATACTTCAGATACAGGCTGGGCAAAGTCTGCATGGAGTAGTGTTTTTTCTCCATGGACCCAAGGAGCATGTGTTTTTGCACACTATTTGCCCCGTTTTGAATCAACTTCCATCTTGCAA
Seq C2 exon
ACCCTCTCCAAGTTCCCCATCACTGTCTTCTGTTCTGCACCAACTGCCTACCGGATGCTTGTTCAGAATGACATGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030935-'7-10,'7-9,8-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(11.6=100)
A:
PF0050123=AMP-binding=FE(12.6=100)
C2:
PF0050123=AMP-binding=FE(6.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATATGCCAGTGACAGCCAC
R:
GCTCATGTCATTCTGAACAAGCA
Band lengths:
222-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: