MmuEX6013582 @ mm9
Exon Skipping
Gene
ENSMUSG00000030945 | Acsm2
Description
acyl-CoA synthetase medium-chain family member 2 [Source:MGI Symbol;Acc:MGI:2385289]
Coordinates
chr7:126705007-126716837:+
Coord C1 exon
chr7:126705007-126705327
Coord A exon
chr7:126707011-126707195
Coord C2 exon
chr7:126716627-126716837
Length
185 bp
Sequences
Splice sites
3' ss Seq
TATTCTACCTTCCTTCACAGCTC
3' ss Score
9.72
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
CTGGTCAGGGCAAAACCTTGCTGTCGATTATGAGAATAAACCTCTCATTGATCCCTTGGGCTAAGGAGCAGTTCAACTGACACTCCTCCACAGGCTCAAAGACTGTGCCTCACATAAACTTCGTTAGGAGGAGTAATATCAGCCTAAAATTGTGCACCATTAATGATTAGCTGAGCCCTCGGAGGCTACTCAGGCTTGATTAGGGAACTGTCAGCTTCAGTGCTCTTCTCTCCACTGATGCTGCAGGAATTCTCAAACGACTTCCCAAGAGGGAAATAGACAAAGCTACTGTCAGAGAGAGTTCCAGAAGAAGACCAGAAG
Seq A exon
CTCTGACTATGCATCATCTATGGAAAATTCCAAGACTTTTCACTCTCTGGGGGAATGAGATTTCCTGCCGTACTTTCCATATGAATATCAAGAAACTAATACCCATACAGTGGGGCCACCAGGAAGCACCTGCCAAGTTCAACTTCGCTAGTGATGTGATAGATCACTGGGCCAGCGTAGAGAAG
Seq C2 exon
GCTGGCAAGAGATCTTCAGGTCCAGCCCTGTGGTGGATGAATGGCAGTGGGAAAGAAATAAAGTGGAGCTTCCGAGAACTGAGTGAAGCCAGTAAACAAACGGCCAATGTTCTCTCGGGAGCCTGTGGCCTACATCGTGGGGACCGTGTGGCAGTAGTGCTTCCCCGAATCCCAGAGTGGTGGCTGATGATCCTGGGCTGCATGCGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030945-'1-5,'1-4,3-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0050123=AMP-binding=PU(0.5=3.4)
C2:
PF0050123=AMP-binding=FE(16.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCAAAGACTGTGCCTCACA
R:
GGGCTGGACCTGAAGATCTCT
Band lengths:
256-441
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: