BtaEX6108954 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019423 | ACSM2A
Description
Bos taurus acyl-CoA synthetase medium-chain family member 2A (ACSM2A), mRNA. [Source:RefSeq mRNA;Acc:NM_001101952]
Coordinates
chr25:18277525-18282903:+
Coord C1 exon
chr25:18277525-18277627
Coord A exon
chr25:18279043-18279227
Coord C2 exon
chr25:18282693-18282903
Length
185 bp
Sequences
Splice sites
3' ss Seq
GTCTTTTCTTTCCTTCATAGGTT
3' ss Score
12.47
5' ss Seq
AAGGTAATG
5' ss Score
8.99
Exon sequences
Seq C1 exon
GATTAGCTGTGCCATCCTCCAAGGCGACAGGGGTTCTGGTGCTGTCTGTTCAGGACGGAGACCAAGAGATCTCCAGAGAGACTTCCTTGAAAGGACTTGGCAG
Seq A exon
GTTTGAACATGCATTGGGGGCGGCAACTCCAGGCACTTTGCATCCTATGGAGGTCTCAGATGTCCAATCACACTATCCGCATTCATACTAGGCAACTGGCATCGCTGCAGTGGGGACACCAGGAAGTTCCTGCCAAATTTAACTTTGCTACTGATGTGATAGATCACTGGGCTGGCATGGAGAAG
Seq C2 exon
GCTGGCAAGCGACCCCCTGGCCCAGCCCTGTGGTGGGTGAATGGCAACGGAGATGAGGTAATGTGGAACTTCAGCCAACTGAGTGAACTCAGTCAACAAACAGCCAACGTCTTCGCAGGGCCATGTGGTCTGCAGCGTGGGGACCGTGTGACAGTGGTGCTGCCCCGAGTGCCTGAGTGGTGGCTGGTGATCCTTGGCTGCATGCGGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019423-'0-3,'0-0,1-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.034 C2=0.014
Domain overlap (PFAM):
C1:
NA
A:
PF0050123=AMP-binding=PU(1.0=5.1)
C2:
PF0050123=AMP-binding=FE(22.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTCAGGACGGAGACCAAGA
R:
CAAGGATCACCAGCCACCAC
Band lengths:
253-438
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]