RnoEX6004600 @ rn6
Exon Skipping
Gene
ENSRNOG00000042084 | Acsm2
Description
acyl-CoA synthetase medium-chain family member 2 [Source:RGD Symbol;Acc:708383]
Coordinates
chr1:189289957-189303494:+
Coord C1 exon
chr1:189289957-189290054
Coord A exon
chr1:189291384-189291568
Coord C2 exon
chr1:189303284-189303494
Length
185 bp
Sequences
Splice sites
3' ss Seq
TATAATTTCTTCCTTCACAGCTC
3' ss Score
10.02
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
CATCAGTGCTGTTCTCTCTACTGGTGCTTCGGGAACTCTAGAACTCCTTCCTGAGAGGGAAGCAAACCAAGCTACTGCCAGAGAGAGTTCCATAAGAG
Seq A exon
CTCTGAATATGCATTGGCTGTGGAAAATTCCAAGACTTTGCACCTTCTGGGGCACTGAGATGTTCCACCGTACTTTCCATATGAATATCAAGAAACTAATGCCCATACAGTGGGGCCACCAAGAAGTCCCTGCCAAGTTCAACTTCGCTAGTGATGTGATAGATCACTGGGCCAGCCTGGAGAAG
Seq C2 exon
GCTGGCAAGAGATCTCCAGGTCCAGCCCTATGGTGGATGAATGGCAGTGGGGAAGAACTAAAGTGGAACTTCAGAGAACTGAGTGAAATCAGTAAACAGACGGCCAATGTTCTCACCAGGGCCTGTGGCCTGCAGCGTGGGGACCGTGTAGCAGTAGTGCTTCCTCGAGTCCCAGAGTGGTGGCTGGTGACCCTCGGCTGCATGCGTTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000042084-'0-3,'0-2,2-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0050123=AMP-binding=PU(0.5=3.4)
C2:
PF0050123=AMP-binding=FE(16.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTCTACTGGTGCTTCGGGA
R:
GGGACTCGAGGAAGCACTACT
Band lengths:
258-443
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]