MmuEX6013584 @ mm10
Exon Skipping
Gene
ENSMUSG00000033533 | Acsm1
Description
acyl-CoA synthetase medium-chain family member 1 [Source:MGI Symbol;Acc:MGI:2152200]
Coordinates
chr7:119658300-119660683:+
Coord C1 exon
chr7:119658300-119658427
Coord A exon
chr7:119659101-119659200
Coord C2 exon
chr7:119660564-119660683
Length
100 bp
Sequences
Splice sites
3' ss Seq
CGGAACTCTTGCTTCTCCAGGTA
3' ss Score
9.06
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
Exon sequences
Seq C1 exon
AATAGCCCAGAGAGCACATCTGAAGTGGAGTGTGGGGACTTTTACAATAGTGGGGATAGAGCGACCATTGATGAAGAGGGCTACATCTGGTTCTTGGGAAGGGGCGATGATGTCATCAATGCTTCCGG
Seq A exon
GTATCGCATCGGGCCTGTAGAGGTGGAGAACGCCTTGGCGGAGCACCCAGCAGTGGCAGAGTCTGCGGTGGTGAGCAGCCCGGACAAGGATCGAGGAGAG
Seq C2 exon
GTGGTGAAGGCGTTTATTGTCCTCAACCCAGAGTTCCTGTCACACGATCAGGAACAGCTTATCAAAGAGCTACAGCATCATGTGAAGTCAGTGACGGCACCATACAAGTACCCCAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033533-'27-30,'27-27,31-30=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.209 A=0.118 C2=0.025
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=PD(10.0=95.3)
A:
PF131931=AMP-binding_C=PU(32.1=76.5)
C2:
PF131931=AMP-binding_C=FE(48.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCCAGAGAGCACATCTGAA
R:
CCTGGGGTACTTGTATGGTGC
Band lengths:
242-342
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types