MmuEX6013597 @ mm9
Exon Skipping
Gene
ENSMUSG00000047026 | Acsm4
Description
acyl-CoA synthetase medium-chain family member 4 [Source:MGI Symbol;Acc:MGI:2681844]
Coordinates
chr7:126848412-126852280:+
Coord C1 exon
chr7:126848412-126848568
Coord A exon
chr7:126850776-126850855
Coord C2 exon
chr7:126852157-126852280
Length
80 bp
Sequences
Splice sites
3' ss Seq
TGTTTTTCTCTCTCTTCCAGACA
3' ss Score
12.82
5' ss Seq
GAGGTACTG
5' ss Score
7.67
Exon sequences
Seq C1 exon
GTACTGGCTGGACTTGACATCCTCAGATATCATGTGGAACATGTCAGACACTGGCTGGATCAAGGCTGCCATTGGTAGTGTGTTTTCTACATGGCTTCGAGGGGCCTGTGTTTTTGTGCACCGGATGGCCCAGTTCGACACTGATATCTTCCTAGAC
Seq A exon
ACACTTACCACATATCCCATCACGACCCTGTGCAGTGCTCCTACGGTGTACCGGATGCTCGTACAAAAGGACCTTAAGAG
Seq C2 exon
ATATCAATTCAAGAGGCTGCGGCACTGCCTGACAGGAGGGGAGCCACTCAACCCCGAAGTGCTGGAACAGTGGAAGATGCAAACTGGGCTGGAGCTGTACGAGGGCTACGGACAGACCGAAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047026-'5-6,'5-5,6-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(12.5=100),PF086946=UFC1=PU(53.0=83.0)
A:
PF0050123=AMP-binding=FE(6.3=100),PF086946=UFC1=FE(31.3=100)
C2:
PF0050123=AMP-binding=FE(9.9=100),PF086946=UFC1=PD(13.3=26.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGCTGCCATTGGTAGTGTG
R:
GCATCTTCCACTGTTCCAGCA
Band lengths:
176-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: