GgaEX1003821 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr14:15223812-15226872:-
Coord C1 exon
chr14:15226697-15226872
Coord A exon
chr14:15224663-15224742
Coord C2 exon
chr14:15223812-15223935
Length
80 bp
Sequences
Splice sites
3' ss Seq
GTTGTTGCTTCACTCACTAGACA
3' ss Score
4.95
5' ss Seq
CAGGTACGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
TTCTTTTTCCTGCTGTTAGGTACTGGTTGGATGTGGCTCCGTCAAACATAGTGTGGGGCATTACAGACACAGGCTGGATAGTAACTTCACTGACATCTGTATTTGATGCCTGGGCTTTGGGATCATGTGTCTTTGTCCACCAGCTCCCACAGATTGAATCATCAGTTATCCTAAAT
Seq A exon
ACACTCTGCAGCTTCCCCATTGACACCATGATTAGTGCTCCCACGCTGTACCGCATGCTGGTGCAAACTGATCTCTCCAG
Seq C2 exon
CTACAAATTCATGAATCTGAAGCACTGCATGAGTGGAGGGGAACCGCTAAACCCAGAAGTCATTGACCAGTGGAAAAGCAAGACAGGGCTAGACATCTATGAAGTATATGGCCAGACTGAAGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000018875-'4-5,'4-4,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(13.9=100)
A:
PF0050123=AMP-binding=FE(6.2=100)
C2:
PF0050123=AMP-binding=FE(9.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGGGCATTACAGACACAGG
R:
CTTCTGGGTTTAGCGGTTCCC
Band lengths:
183-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]