GgaEX1003821 @ galGal4
Exon Skipping
Description
NA
Coordinates
chr14:14468293-14471924:-
Coord C1 exon
chr14:14471768-14471924
Coord A exon
chr14:14469734-14469813
Coord C2 exon
chr14:14468293-14468373
Length
80 bp
Sequences
Splice sites
3' ss Seq
GTTGTTGCTTCACTCACTAGACA
3' ss Score
4.95
5' ss Seq
CAGGTACGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
GTACTGGTTGGATGTGGCTCCGTCAAACATAGTGTGGGGCATTACAGACACAGGCTGGATAGTAACTTCACTGACATCTGTATTTGATGCCTGGGCTTTGGGATCATGTGTCTTTGTCCACCAGCTCCCACAGATTGAATCATCAGTTATCCTAAAT
Seq A exon
ACACTCTGCAGCTTCCCCATTGACACCATGATTAGTGCTCCCACGCTGTACCGCATGCTGGTGCAAACTGATCTCTCCAG
Seq C2 exon
GGAATAATCTGCTCTATTTCTAGAGGAATGAAGATCAAGCCTGGATCAATGGGAAAGGCCGCTCCCCCATTTGATGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000018875_MULTIEX1-18/24=17-20
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(12.6=100)
A:
PF0050123=AMP-binding=FE(6.3=100)
C2:
PF0050123=AMP-binding=FE(6.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCATTACAGACACAGGCTGG
R:
GGCCTTTCCCATTGATCCAGG
Band lengths:
180-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]