GgaEX1003822 @ galGal4
Exon Skipping
Description
NA
Coordinates
chr14:14468293-14469813:-
Coord C1 exon
chr14:14469734-14469813
Coord A exon
chr14:14468883-14469006
Coord C2 exon
chr14:14468293-14468373
Length
124 bp
Sequences
Splice sites
3' ss Seq
CTTTTTGACCCCCTGTGAAGCTA
3' ss Score
5.14
5' ss Seq
GCGGTAGTG
5' ss Score
0.67
Exon sequences
Seq C1 exon
ACACTCTGCAGCTTCCCCATTGACACCATGATTAGTGCTCCCACGCTGTACCGCATGCTGGTGCAAACTGATCTCTCCAG
Seq A exon
CTACAAATTCATGAATCTGAAGCACTGCATGAGTGGAGGGGAACCGCTAAACCCAGAAGTCATTGACCAGTGGAAAAGCAAGACAGGGCTAGACATCTATGAAGTATATGGCCAGACTGAAGCG
Seq C2 exon
GGAATAATCTGCTCTATTTCTAGAGGAATGAAGATCAAGCCTGGATCAATGGGAAAGGCCGCTCCCCCATTTGATGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000018875_MULTIEX1-19/24=18-20
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(6.3=100)
A:
PF0050123=AMP-binding=FE(9.9=100)
C2:
PF0050123=AMP-binding=FE(6.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTGCAGCTTCCCCATTGAC
R:
TGAACATCAAATGGGGGAGCG
Band lengths:
157-281
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]