GgaINT0015370 @ galGal4
Intron Retention
Description
NA
Coordinates
chr14:14468883-14469813:-
Coord C1 exon
chr14:14469734-14469813
Coord A exon
chr14:14469007-14469733
Coord C2 exon
chr14:14468883-14469006
Length
727 bp
Sequences
Splice sites
5' ss Seq
CAGGTACGT
5' ss Score
10.65
3' ss Seq
CTTTTTGACCCCCTGTGAAGCTA
3' ss Score
5.14
Exon sequences
Seq C1 exon
ACACTCTGCAGCTTCCCCATTGACACCATGATTAGTGCTCCCACGCTGTACCGCATGCTGGTGCAAACTGATCTCTCCAG
Seq A exon
GTACGTCAAGAGATATTATTTACCCTAACTACATGTTAGTGATCTTCTAGCTCCAGCTTTTGACCCAGCGCAGGGTCACAATTCAGTTTAAAATATCCTTTATGAAGAGACAGTCGTACAAGATTTGTGAATTTTGCTGATTGTAGAGAATCTTGATGTTTTCCACCAGTAATTTGAGACTTTTCATTACTGAACTTGTCAGCAAATCCCAGAGCGTATAAAACCTGGGAAATTGTAATTCCAATCACCACATTAACTGTCTGTGCTCTGGGGAGTGCTGTCACCTTAGGATAGCGTTAGCATAACTGCTGGGGACTGACAGACCTTCTGCTCCAGTTTCTCACTGATGAACAAACTGTCGCTGCTGGTTGCTCCTGTCCTGTACTTCCTCTCTTGGGCTGTTGCAGAGGGTCAGCAGTCATGCCCCTGGCTCAGCACATTGGTCTCTGGTTAGTTACAAGCTGGTGCTTAAATCCCAGCTGATTTCAACAAAACTTTTACTTTGTTTTTCATGCATGTTTAACTCTACTTGTTCATAATGTTGAGCAAAGACTGATGTCCTTGTGTTACTGGGAACCAAAGAATCAGGAATCTTCTGGTTTTCCTACTTCATGGGAATAACTTCCTCAGCAAACAGAACTCTGGGATTATTTTACAGCATTTTTCTAATCCTTGTTTTATGTAATAGATTTAAGTGTTTCTCTTTGCTTTTTGACCCCCTGTGAAG
Seq C2 exon
CTACAAATTCATGAATCTGAAGCACTGCATGAGTGGAGGGGAACCGCTAAACCCAGAAGTCATTGACCAGTGGAAAAGCAAGACAGGGCTAGACATCTATGAAGTATATGGCCAGACTGAAGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000018875:ENSGALT00000003038:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(6.3=100)
A:
NA
C2:
PF0050123=AMP-binding=FE(9.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTGCAGCTTCCCCATTGAC
R:
CGCTTCAGTCTGGCCATATACT
Band lengths:
201-928
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]