GgaINT0015371 @ galGal4
Intron Retention
Description
NA
Coordinates
chr14:14468293-14469006:-
Coord C1 exon
chr14:14468883-14469006
Coord A exon
chr14:14468374-14468882
Coord C2 exon
chr14:14468293-14468373
Length
509 bp
Sequences
Splice sites
5' ss Seq
GCGGTAGTG
5' ss Score
0.67
3' ss Seq
TTTGATTTTTATTTTTACAGGGA
3' ss Score
8.89
Exon sequences
Seq C1 exon
CTACAAATTCATGAATCTGAAGCACTGCATGAGTGGAGGGGAACCGCTAAACCCAGAAGTCATTGACCAGTGGAAAAGCAAGACAGGGCTAGACATCTATGAAGTATATGGCCAGACTGAAGCG
Seq A exon
GTAGTGTCAACATTCTGTTAAATCTTTGTAATTTCCTTTTGCTTAATGAAATGTTAATGCTTATTTTCAGTAACACAGTCTGTTTCTTCTTTCACGTCTCTCTGAATTTTTCAGTAACCTCCTCCACTGACCACCTCTGAAAGAGCACTTTTGCATGGCTCTCCTCACAGAACCTCTTGGAAACGGGGATTGTTGGGAGGGGATGTGCTGTAATATTTTCTTAAATGTCCTTAAGCAAATTCCAAATGACAGTGGCAGGAGAGAGGGCAGAGCTAAAAGCTAATAAAGATAGGCTAGTAGAGGACACAGATTCTTTGTAGTTAATGGAACAGTATTCTTTCCAGGTATTTCTTCATCTTGCTCATTTCTACTTTACAGAACCAACAACCAGGATCTTCCGAATCTTAATTCCTTCCTTTGGCTTTATTCTAGAAAATACGTGCAATAAACTGAATGTGAATGTAGTGCTTTTCTATGGCAAATCTTTATTTTGATTTTTATTTTTACAG
Seq C2 exon
GGAATAATCTGCTCTATTTCTAGAGGAATGAAGATCAAGCCTGGATCAATGGGAAAGGCCGCTCCCCCATTTGATGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000018875:ENSGALT00000003038:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(9.9=100)
A:
NA
C2:
PF0050123=AMP-binding=FE(6.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTCATGAATCTGAAGCACTGCA
R:
TGAACATCAAATGGGGGAGCG
Band lengths:
198-707
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]