MmuEX6013712 @ mm9
Exon Skipping
Gene
ENSMUSG00000062017 | Abca14
Description
ATP-binding cassette, sub-family A (ABC1), member 14 [Source:MGI Symbol;Acc:MGI:2388708]
Coordinates
chr7:127359643-127367592:+
Coord C1 exon
chr7:127359643-127359902
Coord A exon
chr7:127367039-127367155
Coord C2 exon
chr7:127367475-127367592
Length
117 bp
Sequences
Splice sites
3' ss Seq
TTGTGTTGATTCCCCTTCAGGAA
3' ss Score
8.79
5' ss Seq
AAGGCAAGT
5' ss Score
3.24
Exon sequences
Seq C1 exon
GATACATCAGAGAAGGATTTCTTATCGTGCAGCATTCAGTAGACAAGGCCATCATGATGTATCACAGTGGCAGAGCAGCTGAAGACATATTTGCCAACACCACAATTTATGCGGAGAGATTCCCACACCCGGCCTTTATTCATGACAGCTTCTTGTGGACTTTTATTGCTATGTTTCCTTGGACAATTTTATTTACATTTACTCAAATGGCACTTGTCATAGTTGGGACCATTATGCTGGAAAAGGAAAAGAGATTAAAG
Seq A exon
GAATACCAGCTCATGGTGGGACTCAGTAATGCTATGCTCTGGGTTTCCTACTTCATCACCTTCTTATTGATGTATTTCATCATCATCTGTTTGCTGTGTGGGATTTTATTCCTCAAG
Seq C2 exon
ATTACACACGAGAGAGTCTTCCAGCATAGTGACCCGCTCTTCATCGCCTTCTATTTCATGTGTTTTGCCGTCTCCTCAGTGCTGCTCGGCTTCCTGATTAGCACACTCTTTAATAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000062017-'7-7,'7-6,10-7=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(19.5=100)
A:
PF126982=ABC2_membrane_3=FE(21.3=100)
C2:
PF126982=ABC2_membrane_3=FE(21.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTATCACAGTGGCAGAGCAGC
R:
GAAGAGCGGGTCACTATGCTG
Band lengths:
244-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: