MmuEX6013712 @ mm10
Exon Skipping
Gene
ENSMUSG00000062017 | Abca14
Description
ATP-binding cassette, sub-family A (ABC1), member 14 [Source:MGI Symbol;Acc:MGI:2388708]
Coordinates
chr7:120216129-120224078:+
Coord C1 exon
chr7:120216129-120216388
Coord A exon
chr7:120223525-120223641
Coord C2 exon
chr7:120223961-120224078
Length
117 bp
Sequences
Splice sites
3' ss Seq
TTGTGTTGATTCCCCTTCAGGAA
3' ss Score
8.79
5' ss Seq
AAGGCAAGT
5' ss Score
3.24
Exon sequences
Seq C1 exon
GATACATCAGAGAAGGATTTCTTATCGTGCAGCATTCAGTAGACAAGGCCATCATGATGTATCACAGTGGCAGAGCAGCTGAAGACATATTTGCCAACACCACAATTTATGCGGAGAGATTCCCACACCCGGCCTTTATTCATGACAGCTTCTTGTGGACTTTTATTGCTATGTTTCCTTGGACAATTTTATTTACATTTACTCAAATGGCACTTGTCATAGTTGGGACCATTATGCTGGAAAAGGAAAAGAGATTAAAG
Seq A exon
GAATACCAGCTCATGGTGGGACTCAGTAATGCTATGCTCTGGGTTTCCTACTTCATCACCTTCTTATTGATGTATTTCATCATCATCTGTTTGCTGTGTGGGATTTTATTCCTCAAG
Seq C2 exon
ATTACACACGAGAGAGTCTTCCAGCATAGTGACCCGCTCTTCATCGCCTTCTATTTCATGTGTTTTGCCGTCTCCTCAGTGCTGCTCGGCTTCCTGATTAGCACACTCTTTAATAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000062017-'7-9,'7-8,14-9=AN
Average complexity
A_C1
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(19.5=100)
A:
PF126982=ABC2_membrane_3=FE(8.6=100)
C2:
PF126982=ABC2_membrane_3=FE(8.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTATCACAGTGGCAGAGCAGC
R:
GAAGAGCGGGTCACTATGCTG
Band lengths:
244-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types