RnoEX6004658 @ rn6
Exon Skipping
Gene
ENSRNOG00000043296 | Abca14
Description
ATP-binding cassette, subfamily A (ABC1), member 14 [Source:RGD Symbol;Acc:1561491]
Coordinates
chr1:189979111-189986925:+
Coord C1 exon
chr1:189979111-189979370
Coord A exon
chr1:189986388-189986504
Coord C2 exon
chr1:189986808-189986925
Length
117 bp
Sequences
Splice sites
3' ss Seq
TTGTGTTGATTCTTCCTCAGGAA
3' ss Score
8.22
5' ss Seq
AAGGCAAGT
5' ss Score
3.24
Exon sequences
Seq C1 exon
GATATATCAGAGAAGGATTTCTTCTCGTGCAGCATTCCGTAGACAAGGCCATCATGATGCATCACAGTGGCAGAGCAGCCGAAGCCATGTTTGCTAACACCACAATTTATGCGAGGAGATTCCCATACCCAGCCTTCATTCATGACAACTTCTTGTGGACTTTCATTGTTATGTTTCCTTGGACAATTTTATTTACATTTACTCAAATGGCACTTGACATAATTGGGACGATTATGTTGGAAAAGGAAAAGCGATTAAAG
Seq A exon
GAATACCAGCTCATGGTGGGACTCAGTAATGCTATGCTCTGGGTTTCCTATTTCATCACCTTCTTATTGATGTATTTCATCATCATCTGTTTGCTGTGTGGGATTTTATTTCTCAAG
Seq C2 exon
ATTACGCATGAGAGAGTCTTTCAACACAGTGACCCGCTCTTCATCGCCTTCTACTTCCTGTGTTTTGCCATCTCCTCCATGTTGCTCGGCTTCATGATTAGCACATTCTTTAACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000043296-'12-14,'12-13,15-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(19.7=100)
A:
PF126982=ABC2_membrane_3=FE(21.2=100)
C2:
PF126982=ABC2_membrane_3=FE(21.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAGATTCCCATACCCAGCC
R:
ATGAAGCCGAGCAACATGGAG
Band lengths:
242-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]