RnoEX6004657 @ rn6
Exon Skipping
Gene
ENSRNOG00000043296 | Abca14
Description
ATP-binding cassette, subfamily A (ABC1), member 14 [Source:RGD Symbol;Acc:1561491]
Coordinates
chr1:189986388-189987411:+
Coord C1 exon
chr1:189986388-189986504
Coord A exon
chr1:189986808-189986925
Coord C2 exon
chr1:189987238-189987411
Length
118 bp
Sequences
Splice sites
3' ss Seq
ATCCCCAATTATTTCATCAGATT
3' ss Score
5.62
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
GAATACCAGCTCATGGTGGGACTCAGTAATGCTATGCTCTGGGTTTCCTATTTCATCACCTTCTTATTGATGTATTTCATCATCATCTGTTTGCTGTGTGGGATTTTATTTCTCAAG
Seq A exon
ATTACGCATGAGAGAGTCTTTCAACACAGTGACCCGCTCTTCATCGCCTTCTACTTCCTGTGTTTTGCCATCTCCTCCATGTTGCTCGGCTTCATGATTAGCACATTCTTTAACAGAG
Seq C2 exon
CTTCTCTGGCCACTTCTATTGCAGGGTTCCTTCATTTTCTCACCTTCTTTCCATATTTGATCGTATTTAGTCTGTATGATCAGACAAGCCTCAGTGGGAAGCTGGCTCTCTGTCTCATTACCAACACCGCACTAGCATTTGGGACTGACTTGATATGCAAGCTGGAAATGAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000043296-'15-15,'15-14,16-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(21.2=100)
A:
PF126982=ABC2_membrane_3=FE(21.8=100)
C2:
PF126982=ABC2_membrane_3=FE(13.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTCATGGTGGGACTCAGTA
R:
AAATGCTAGTGCGGTGTTGGT
Band lengths:
250-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]