MmuEX6013711 @ mm10
Exon Skipping
Gene
ENSMUSG00000062017 | Abca14
Description
ATP-binding cassette, sub-family A (ABC1), member 14 [Source:MGI Symbol;Acc:MGI:2388708]
Coordinates
chr7:120223525-120224518:+
Coord C1 exon
chr7:120223525-120223641
Coord A exon
chr7:120223961-120224078
Coord C2 exon
chr7:120224345-120224518
Length
118 bp
Sequences
Splice sites
3' ss Seq
CTCCCTGATTATTTCATCAGATT
3' ss Score
6.54
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GAATACCAGCTCATGGTGGGACTCAGTAATGCTATGCTCTGGGTTTCCTACTTCATCACCTTCTTATTGATGTATTTCATCATCATCTGTTTGCTGTGTGGGATTTTATTCCTCAAG
Seq A exon
ATTACACACGAGAGAGTCTTCCAGCATAGTGACCCGCTCTTCATCGCCTTCTATTTCATGTGTTTTGCCGTCTCCTCAGTGCTGCTCGGCTTCCTGATTAGCACACTCTTTAATAAAG
Seq C2 exon
CCTCTCTGGCCACTTCCATTGCAGGGTTCCTCCACTTCCTCACCTTCTTTCCATATTTGATACTATATCATAAGTATGACCAGATAAGCCTCAGTGGGAAGCTGGCTCTCTGTCTCATTACCAACACGGCGCTAGCATTTGGGACTGACTTGATATGTAAGCTGGAAATGAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000062017-'7-20,'7-9,15-20=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(8.6=100)
A:
PF126982=ABC2_membrane_3=FE(8.9=100)
C2:
PF126982=ABC2_membrane_3=FE(13.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCTCATGGTGGGACTCAGT
R:
CGCCGTGTTGGTAATGAGACA
Band lengths:
242-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types