MmuEX6013741 @ mm10
Exon Skipping
Gene
ENSMUSG00000051900 | Abca16
Description
ATP-binding cassette, sub-family A (ABC1), member 16 [Source:MGI Symbol;Acc:MGI:2388711]
Coordinates
chr7:120527686-120534879:+
Coord C1 exon
chr7:120527686-120527850
Coord A exon
chr7:120533613-120533800
Coord C2 exon
chr7:120534754-120534879
Length
188 bp
Sequences
Splice sites
3' ss Seq
TGTGTCTCTTGTATCCACAGACA
3' ss Score
11.34
5' ss Seq
AATGTAAGT
5' ss Score
8.62
Exon sequences
Seq C1 exon
GTAATGACTTTCCTAACTTTGTCCACATCCTCATAAGGGCAATTTTGATGGCATTGCCTAGTTACAACCTTGCAATGAGTATCAGCAAGTATTTTGATGACTATGAGGTGAAAAGATTGTGTGCTAGGGAATTCAAAAGCATTTACTTGGATTGCAGTGACCCAT
Seq A exon
ACACTCAGAACAACGTGTATGGCTTTGGAGAGCATGGGATTGGGAAGTTTCTAATCACACTGGCTACCATTGGCTTGGTTTTTCTCCTCTTGCTTTTATCACTGGAGTCTGTTTCCTGTAGTCTGAAGAGCTTTGTCTTTCGAAACATTATCTTTTATTTCTACAATAAGCTCAGAAAAGGCAGGAAT
Seq C2 exon
GCTATACCATCTAATCAGAGAACCAAAGAAGATGAAGATGAAGACATAAAAAAAGAAAAAGGAAAAGTCTTCACACTGCTGCTCAGGTTACAGAACACCCCACTGCTCCTTAATGAAGTTACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000051900-'37-36,'37-35,39-36
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.286
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(14.1=100)
A:
PF126982=ABC2_membrane_3=PD(8.5=52.4)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGCAATTTTGATGGCATTGC
R:
TAAGGAGCAGTGGGGTGTTCT
Band lengths:
242-430
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types