RnoEX0004799 @ rn6
Exon Skipping
Gene
ENSRNOG00000015783 | Abca16
Description
ATP-binding cassette, subfamily A (ABC1), member 16 [Source:RGD Symbol;Acc:1563534]
Coordinates
chr1:190336075-190352468:+
Coord C1 exon
chr1:190336075-190336239
Coord A exon
chr1:190351262-190351449
Coord C2 exon
chr1:190352346-190352468
Length
188 bp
Sequences
Splice sites
3' ss Seq
TGTGTCTCTTGTGTCCACAGTCA
3' ss Score
11.14
5' ss Seq
CATGTAAGT
5' ss Score
8.31
Exon sequences
Seq C1 exon
GTGAAGACTTTCCTGCCCTTATCCACATCCTCATAAAGACAATTTTAATGGCACTGCCTAGTTACAATCTTGCAATGAGTATCAGCAAGTATTTTGATGACTATGAGGTAAAACGACTGTGTGCTAGGGAATTCAGAAGCATTTACATGGATTGCAGTGAGCCAT
Seq A exon
TCATTCAGAACAACGTGTATGGCTTTGGAGAGCATGGGATTGGAAAATTTCTGATCACACTGGCTACCATGGGCTTGGTTTTTCTCCTCTTGCTCTTATCCCTGGAGTCTGTTTCCAGTAGCCTGAAGAACTTTGTCTTTCGAAACGTTCTCTTTTATTTCTACAATAAGATCAGAAAAGGCAGGCAT
Seq C2 exon
GGTGTACACTCTAAGAGTACCAAAGAAGATGAGGATGAAGACATAAGAAAAGAAAAAAGAAAAGTCTTTACACTGCTGCTCAGGTTACAGAACACCCCATTGGTCCTTAATGAAGTTACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015783_CASSETTE6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.053
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(14.1=100)
A:
PF126982=ABC2_membrane_3=PD(8.5=52.4)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTGCCCTTATCCACATCCT
R:
GGGGTGTTCTGTAACCTGAGC
Band lengths:
253-441
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]