MmuEX6013754 @ mm9
Exon Skipping
Gene
ENSMUSG00000051900 | Abca16
Description
ATP-binding cassette, sub-family A (ABC1), member 16 [Source:MGI Symbol;Acc:MGI:2388711]
Coordinates
chr7:127576857-127582856:+
Coord C1 exon
chr7:127576857-127577116
Coord A exon
chr7:127579350-127579466
Coord C2 exon
chr7:127582683-127582856
Length
117 bp
Sequences
Splice sites
3' ss Seq
CTGTGTTGACAATCCTACAGGAG
3' ss Score
5.54
5' ss Seq
CAGGCAAGT
5' ss Score
3.1
Exon sequences
Seq C1 exon
GGTATATTAAGGAAGGATTCCTGGCAGTACAGCATGCTTTGGACAAGAGCATCATGCTGTATCATGAAAGCAGTGCTGGGAAAAAGCTGTTTGATGAAATCGACACTGTGATACAGAGGTTTCCATACCCAAGTCATCCTCAGGATAAACTACTTTGGATTTCCAGTCCTTTCATCCCATTAATGTTCATACTCATGTTCTCTTCCATTGTCCTTTCCATCATGCGATCCATTGTGTTTGAAAAGGAAAAACGGTTAAAG
Seq A exon
GAGTACCAGCTCATAATGGGGCTTAGAAATTGGATCATCTGGATTGGTTATTTCTTCACGTTCTTCCCGTTATATGTCATCATTATCCTTTTGATATGTATATTACTCTTTGTCCAG
Seq C2 exon
CTCGTTTGGCTGCTTCTGCTGGAAACCTCCTATTTTTTGCCAGTTTCTTTCCCTATAATTTCATCTCTGAATACTATGGGATGTTGAACCTTACTACCAAGATAACCGCCTGTCTGAGTGCAAATGTTGCTTTGGCACTGGGAATTAATATCTTAATCAAGTTGGAAATACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000051900-'5-7,'5-5,7-7=AN
Average complexity
A_C2
Mappability confidence:
89%=100=80%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=PU(50.8=97.1)
A:
PF126982=ABC2_membrane_3=FE(28.8=100)
C2:
PF126982=ABC2_membrane_3=PD(18.2=82.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCATGCTTTGGACAAGAGCA
R:
TTTCCAGCAGAAGCAGCCAAA
Band lengths:
255-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: