MmuEX6013755 @ mm9
Exon Skipping
Gene
ENSMUSG00000051900 | Abca16
Description
ATP-binding cassette, sub-family A (ABC1), member 16 [Source:MGI Symbol;Acc:MGI:2388711]
Coordinates
chr7:127574622-127579466:+
Coord C1 exon
chr7:127574622-127574763
Coord A exon
chr7:127576857-127577116
Coord C2 exon
chr7:127579350-127579466
Length
260 bp
Sequences
Splice sites
3' ss Seq
CCATGAGTTTCTTTATACAGGGT
3' ss Score
6
5' ss Seq
AAGGTAGTA
5' ss Score
5.69
Exon sequences
Seq C1 exon
GTAAAATATCACTTGCGTTTTGTTGGTGCACAGAGGACCATCTGGTGGCCAGACAAGTTAGGCTGGAAAACGAGACTTCTCTTTCCTAATCATCCTTCTATACGACCCAGGAATCCAAATTATCTTGATGGAGGAAGTCCTG
Seq A exon
GGTATATTAAGGAAGGATTCCTGGCAGTACAGCATGCTTTGGACAAGAGCATCATGCTGTATCATGAAAGCAGTGCTGGGAAAAAGCTGTTTGATGAAATCGACACTGTGATACAGAGGTTTCCATACCCAAGTCATCCTCAGGATAAACTACTTTGGATTTCCAGTCCTTTCATCCCATTAATGTTCATACTCATGTTCTCTTCCATTGTCCTTTCCATCATGCGATCCATTGTGTTTGAAAAGGAAAAACGGTTAAAG
Seq C2 exon
GAGTACCAGCTCATAATGGGGCTTAGAAATTGGATCATCTGGATTGGTTATTTCTTCACGTTCTTCCCGTTATATGTCATCATTATCCTTTTGATATGTATATTACTCTTTGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000051900-'4-5,'4-4,5-5=AN
Average complexity
A_S
Mappability confidence:
88%=100=75%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.021 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(10.9=100)
A:
PF126982=ABC2_membrane_3=PU(50.8=97.1)
C2:
PF126982=ABC2_membrane_3=FE(28.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATATCACTTGCGTTTTGTTGGTGC
R:
AAAGGATAATGATGACATATAACGGG
Band lengths:
228-488
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: