GgaEX6013151 @ galGal3
Exon Skipping
Gene
ENSGALG00000001967 | E1BVQ5_CHICK
Description
NA
Coordinates
chr14:14349054-14351269:-
Coord C1 exon
chr14:14351104-14351269
Coord A exon
chr14:14349768-14350027
Coord C2 exon
chr14:14349054-14349170
Length
260 bp
Sequences
Splice sites
3' ss Seq
CCTGTGTTGTTGCCTTGCAGGTT
3' ss Score
12.26
5' ss Seq
AAGGTAACG
5' ss Score
10.19
Exon sequences
Seq C1 exon
GTGGACTATGAGCTGCGCTTCAAGTACAGCCCCAGGAACGCGCCACGGAGTGAGCAGACGGGGCTGAACCCCAACCTGGACCGGGACTGGCACACCAGCTACCTCTTCCCACTCTTCCAGCTGCCCGGGCCCCGCGAGGCCAAGTTTGTGGATGGAGGAACGCCGG
Seq A exon
GTTACATCCGGGAGGGCTTCCTGGCAGTGCAGCATGCTGTGGACCGGGCCATCATGCAGTATCACACCAACAGCTCTGCCACCAGCCTGCTGGAGAACATCACCGTGGTGGTGCAGCGCTTCCCCTACCCGTCCTACGTCAACGACCTCTTTGTCCTCGCCATCCAGAACCAGCTCCCACTGCTGCTCATGCTCAGCTTCACCTACACCTCGCTCAACATCGTCCGCGCCGTCGTGCACGAGAAGGAGAAGAAGCTGAAG
Seq C2 exon
GAGTACATGCACATGATGGGCCTCAGCAACTGGCTGCACTGGAGCGCCTGGTTCCTCATGTTCTTCCTCTTCCTGCTGGTGTCTGTGTTCTTTGTCACCCTGCTCTTCTGTGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001967-'5-6,'5-5,6-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.196 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=PU(11.4=60.7)
A:
PF126982=ABC2_membrane_3=FE(28.8=100)
C2:
PF126982=ABC2_membrane_3=FE(12.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACTATGAGCTGCGCTTCAA
R:
TGACACAGAAGAGCAGGGTGA
Band lengths:
279-539
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]