DreEX6015431 @ danRer10
Exon Skipping
Gene
ENSDARG00000100524 | abca3b
Description
ATP-binding cassette, sub-family A (ABC1), member 3b [Source:ZFIN;Acc:ZDB-GENE-050517-2]
Coordinates
chr3:12472228-12479847:+
Coord C1 exon
chr3:12472228-12472393
Coord A exon
chr3:12479094-12479353
Coord C2 exon
chr3:12479731-12479847
Length
260 bp
Sequences
Splice sites
3' ss Seq
TTATCTATGTCTCTACGCAGGTT
3' ss Score
10.07
5' ss Seq
AAGGTGAAA
5' ss Score
4.51
Exon sequences
Seq C1 exon
GTCAGCTATCATCTGCGCTTCACGTACAGCCCCAGAAATGCTCCAGCCCGAGAGAAGTCCGAGCTCAACCCTAACAATGATATGGACTGGCACACGCTCAGCCTGTTCCCGCTGTTCCAGATGCCCGGACCCAGAGAACAACACGACCCTCACGGGGGAACGCCAG
Seq A exon
GTTATTACCGTGAGGGTTTCCTTCAGGTCCAGTACGCGGTGGACAGAGCGATCATGATGGCCTACAACAGAAGCGCGGCCATGGCTCTCTTCGACCAAACACAGGTGCTGCTGTCCCGCTTCCCTTACCCAGCGTTCATCTACGACGTCTTCATCCTGGCCATCCAGAACCAGCTGCCCCTGCTGCTTGTGCTCAGCTTCACCTACACGGCACTGAACATCGTCCGCGCCGTCGTGCAGGAGAAGGAGAGGAAGCTGAAG
Seq C2 exon
GAGTACATGCGCATGATGGGTCTCAGTAACTGGCTGCACTGGAGCGCCTGGTTCCTCATGTTTTTCCTCTTCCTCTCCATCTCCATCTTCTTTGTAACCGTGCTCTTCTGTGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100524-'4-5,'4-4,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.357 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(12.4=100)
A:
PF126982=ABC2_membrane_3=FE(19.4=100)
C2:
PF126982=ABC2_membrane_3=FE(8.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTATCATCTGCGCTTCACGT
R:
TTCACACAGAAGAGCACGGTT
Band lengths:
278-538
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]