MmuEX6075647 @ mm10
Exon Skipping
Gene
ENSMUSG00000024130 | Abca3
Description
ATP-binding cassette, sub-family A (ABC1), member 3 [Source:MGI Symbol;Acc:MGI:1351617]
Coordinates
chr17:24366768-24376480:+
Coord C1 exon
chr17:24366768-24366933
Coord A exon
chr17:24374244-24374503
Coord C2 exon
chr17:24376364-24376480
Length
260 bp
Sequences
Splice sites
3' ss Seq
TCCTCTGTTTCTGAACTCAGGAT
3' ss Score
7.89
5' ss Seq
AAGGTAACC
5' ss Score
9.24
Exon sequences
Seq C1 exon
GTGAAATACCACCTGCGCTTCAGTTACACACGAAGAAATTACATGTGGACCCAAACAGGAAATATTTTCCTAAAAGAGACTGAAGGCTGGCATACCACTTCACTTTTTCCACTTTTTCCAAGCCCCGGACCGCGGGAACCTTCATCACCTGATGGCGGTGAACCTG
Seq A exon
GATACATTCGGGAAGGCTTCCTGGCCATGCAACATGCTGTAGACAAAGCCATCATGCGTTACCATGCCAACACCTCTGCACAGCAGCTGTTCCAGAAGCTCATGGTGATCACCAAAAGGTTCCCGTTCCCACCATACATCTCAGATCCATTCCTCATTGCCATCCAGTACCAGCTTCCTCTGCTGCTCATGCTGAGTTTCACCTACACCTCCCTCACCATCATCCGGGCTGTGGTGCAGGAGAAGGAGAAAAAACTAAAG
Seq C2 exon
GAGTACATGCGCATGATGGGGCTTAACAGCTGGCTACACTGGAGCGCTTGGTTCCTCATGTTCTTCCTATTCTTCCTCATCGTGGTCTCCTTCATGACCCTCCTGTTCTGTGTCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024130-'16-21,'16-19,18-21
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.232 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(12.2=100)
A:
PF126982=ABC2_membrane_3=FE(19.2=100)
C2:
PF126982=ABC2_membrane_3=FE(8.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATACCACCTGCGCTTCAGTT
R:
TGACACAGAACAGGAGGGTCA
Band lengths:
277-537
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types