RnoEX0004849 @ rn6
Exon Skipping
Gene
ENSRNOG00000050057 | Abca3
Description
ATP binding cassette subfamily A member 3 [Source:RGD Symbol;Acc:1307174]
Coordinates
chr10:13739077-13749066:+
Coord C1 exon
chr10:13739077-13739242
Coord A exon
chr10:13746860-13747119
Coord C2 exon
chr10:13748950-13749066
Length
260 bp
Sequences
Splice sites
3' ss Seq
TCCTCTGTTTCTGAACTCAGGGT
3' ss Score
7.98
5' ss Seq
AAGGTAACC
5' ss Score
9.24
Exon sequences
Seq C1 exon
GTGAGATACCACCTACGCTTCAGTTACACGCGAAGAAATTACATGTGGACCCAAACAGGAAATCTTTTCCTCAAAGAGACTGAAGGCTGGCACACCGCTTCTCTTTTCCCGCTTTTCCCAAGCCCAGGACCAAGGGAACCTTCATCACCTGATGGCGGTGAACCGG
Seq A exon
GGTACATCCGTGAGGGCTTCCTGGCAGTGCAACACGCTGTAGACAAAGCCATCATGCATTACCATGCCAACGCCTCTGCACACCAGCTGTTCCAGAAGCTCACGGTGATCACCAAAAGGTTCCCGTTCCCGCCATACATCTCAGACCCATTCCTCATTGCCATCCAGTACCAGCTTCCTCTGCTGCTCATGCTGAGCTTCACCTACACCTCCCTCACCATCATCCGGGCTGTGGTGCAGGAGAAAGAGAAAAAACTAAAG
Seq C2 exon
GAGTACATGCGCATGATGGGGCTCAGCAGCTGGCTACACTGGAGCGCTTGGTTCCTCATGTTCCTCCTGTTCTCCCTCATCGTGGTCTCCTTCATGACCCTCCTGTTCTGTGTCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000050057-'10-10,'10-9,11-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.179 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(12.2=100)
A:
PF126982=ABC2_membrane_3=FE(19.2=100)
C2:
PF126982=ABC2_membrane_3=FE(8.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGATACCACCTACGCTTCAGT
R:
TGACACAGAACAGGAGGGTCA
Band lengths:
280-540
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]