MmuEX6014671 @ mm10
Exon Skipping
Gene
ENSMUSG00000006204 | 5430419D17Rik
Description
RIKEN cDNA 5430419D17 gene [Source:MGI Symbol;Acc:MGI:1918645]
Coordinates
chr7:131201732-131222910:+
Coord C1 exon
chr7:131201732-131201797
Coord A exon
chr7:131210228-131210287
Coord C2 exon
chr7:131222593-131222910
Length
60 bp
Sequences
Splice sites
3' ss Seq
CTGATTTTCTTCTCCCACAGGTG
3' ss Score
12.8
5' ss Seq
CAGGTTAGT
5' ss Score
8.02
Exon sequences
Seq C1 exon
TCCTACCTGTGGCTGACTCAGCACCTGGCAGTCGAAGAGCACATGCGCCCAGGATCAACCTCAAAG
Seq A exon
GTGCTGATATGTTACCAGACCTCACTCCAGTAATAGATCCGGAGTCGTACAAGCCATCAG
Seq C2 exon
GAGGCTGGGCCCCCGTGAGGCTAGCAGGCAACCACGGGAGCTGTGCGGGCCGTGTAGAGCTCTTCTACCAGGGAGTCTGGGGGACTGTGTGTGATGACCTCTGGGACCTTCCACAAGCGAACATCATCTGCAGGCAGCTGGGGTGCGGCTGGGCTGTTTCGGCCCTGAGCGAAGCTTACTTTGGGCAAGGTTCTGGGAAGATTCTCCTTGATAATGTTCATTGCAAGGGGCACGAGGAACACCTGGAGGAGTGCTCCCACCTTGGGTGGTTCTCCCACAACTGTGACCACAGTGAAGACGCCAGTGTCATCTGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000006204-'8-15,'8-11,10-15=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.522 A=0.280 C2=0.017
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0053013=SRCR=WD(100=91.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGCAGTCGAAGAGCACATG
R:
AGGTCCCAGAGGTCATCACAC
Band lengths:
148-208
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types