MmuEX6014679 @ mm10
Exon Skipping
Gene
ENSMUSG00000040205 | Cuzd1
Description
CUB and zona pellucida-like domains 1 [Source:MGI Symbol;Acc:MGI:1202881]
Coordinates
chr7:131314739-131316758:-
Coord C1 exon
chr7:131316608-131316758
Coord A exon
chr7:131316053-131316121
Coord C2 exon
chr7:131314739-131314911
Length
69 bp
Sequences
Splice sites
3' ss Seq
GACTGTCGTGCTATCTACAGATT
3' ss Score
8.65
5' ss Seq
CTAGTAAGT
5' ss Score
8.78
Exon sequences
Seq C1 exon
TTATTCCAAACTGCGGTGGTGACCTGCGAGCATTGGAAGGGTCCTTCAGCAGCCCCAATTATCCAAAGCCGCACCCTGAGCTGGCATATTGTGTCTGGCACATACAAGTGGGGAAAGGCTATAAGATACAATTGAAGTTTACAGATCTCTT
Seq A exon
ATTATGCCAATTCCTACAAAGGCTTTTCTGCTTCCTACACTTCAATTTACATCCACGATGTCAACACTA
Seq C2 exon
CATCTCTAAGTTGTGTTTCTGACAAGATGAGAGTCATCATAAGCAAATCATACCTACCGGCACTCAACTACAATGAGAGCAATTTGCAGCTAAATGACCCAACTTGCAGACCGAATGTATCAAATGTCATAGAGTTCTCTATCCCTCTGCACGAATGCGGTACAGTCAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040205-'7-9,'7-8,8-9
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PU(42.2=90.2)
A:
PF0043115=CUB=PD(56.9=83.8)
C2:
PF0010018=Zona_pellucida=PU(22.1=93.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTGGCACATACAAGTGGGG
R:
ATTCGGTCTGCAAGTTGGGTC
Band lengths:
175-244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types