MmuEX6015041 @ mm9
Exon Skipping
Gene
ENSMUSG00000054672 | 5830411N06Rik
Description
RIKEN cDNA 5830411N06 gene [Source:MGI Symbol;Acc:MGI:2443685]
Coordinates
chr7:147484259-147485690:+
Coord C1 exon
chr7:147484259-147484282
Coord A exon
chr7:147484878-147485015
Coord C2 exon
chr7:147485512-147485690
Length
138 bp
Sequences
Splice sites
3' ss Seq
CCTCTTTCTGTGCTTCACAGGCA
3' ss Score
10.32
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
Exon sequences
Seq C1 exon
GTATCCCTGGAACCATGGCATCCG
Seq A exon
GCAATTCTTCAGCTCCTCCACCTGTTCCTGAGTTCTGGACCATGCCTGAGATTGCCTGTCTGGTCCTTGGCTGCCTCTTGGGCATAGTCTTTCTGGTCCTGGCTGTTCAGTGGTGTCATAGCAGAGCCATTGGCCTGG
Seq C2 exon
GTTCTGGAGCAGTGGCGGAGCTGCCCTCAGAGGTTGTCTATGAATGCATTGAAACAGTCCCTATGGATGAGAAAGAGGAGCCAGCAGCATCCCAGAGTCCAGTGCAGGATGAGGATTATGATGATGCAGAAGAGCCCAAGGACAGCCCGGGGGAAGATATGGAGGCTGGGCACCATTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000054672-'14-14,'14-13,15-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.111 A=0.191 C2=0.644
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTATCCCTGGAACCATGGCAT
R:
CAATGGTGCCCAGCCTCCATA
Band lengths:
202-340
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: