MmuEX6015041 @ mm10
Exon Skipping
Gene
ENSMUSG00000054672 | 5830411N06Rik
Description
RIKEN cDNA 5830411N06 gene [Source:MGI Symbol;Acc:MGI:2443685]
Coordinates
chr7:140298360-140299800:+
Coord C1 exon
chr7:140298360-140298383
Coord A exon
chr7:140298979-140299116
Coord C2 exon
chr7:140299613-140299800
Length
138 bp
Sequences
Splice sites
3' ss Seq
CCTCTTTCTGTGCTTCACAGGCA
3' ss Score
10.32
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
Exon sequences
Seq C1 exon
GTATCCCTGGAACCATGGCATCCG
Seq A exon
GCAATTCTTCAGCTCCTCCACCTGTTCCTGAGTTCTGGACCATGCCTGAGATTGCCTGTCTGGTCCTTGGCTGCCTCTTGGGCATAGTCTTTCTGGTCCTGGCTGTTCAGTGGTGTCATAGCAGAGCCATTGGCCTGG
Seq C2 exon
GTTCTGGAGCAGTGGCGGAGCTGCCCTCAGAGGTTGTCTATGAATGCATTGAAACAGTCCCTATGGATGAGAAAGAGGAGCCAGCAGCATCCCAGAGTCCAGTGCAGGATGAGGATTATGATGATGCAGAAGAGCCCAAGGACAGCCCGGGGGAAGATATGGAGGCTGGGCACCATTGAGCCTGACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000054672-'8-19,'8-17,19-19=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.111 A=0.191 C2=0.644
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTATCCCTGGAACCATGGCAT
R:
CAGTCAGGCTCAATGGTGC
Band lengths:
212-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types