MmuEX6018484 @ mm9
Exon Skipping
Gene
ENSMUSG00000035861 | Tmprss11bnl
Description
transmembrane protease, serine 11b N terminal like [Source:MGI Symbol;Acc:MGI:2442893]
Coordinates
chr5:87091199-87093339:-
Coord C1 exon
chr5:87093301-87093339
Coord A exon
chr5:87092413-87092587
Coord C2 exon
chr5:87091199-87091458
Length
175 bp
Sequences
Splice sites
3' ss Seq
CAAACGGACCACTTCTGAAGGCT
3' ss Score
0.48
5' ss Seq
AGGGTAAGA
5' ss Score
9.21
Exon sequences
Seq C1 exon
AAATCAGTAAGGTTGATGCTGAGAAGATTATCAACAACC
Seq A exon
GCTGTGGGAGAAGACCAAGAATGTCTGCAACCTACGACAGAATCACGGGAGGTTCCACTGCTCACAAAGGAGAGTGGCCATGGCAAGCGAGTCTCAGAGTGAATGGTAAACACTACTGTGGGGCATCTCTGATTGGCGAAAGATTTCTGCTCACAGCAGCTCATTGCTTTCAAGG
Seq C2 exon
GACAAATAATCCAAAAAACTTAACTGTCAGCTTTGGCACTAGAGTAACTCCAGCCTACATGCAGCATTCTGTTCAAGAGATTATTATTCATGAAGATTATGTGAAGGGGGAACATCATGATGACGTTGCAGTTATAAAGCTCACTGAAAAAGTTTCATTCAATAATGATGTGCATCGGGTTTGTCTTCCGGAATCCACCCAGATTTTTCCACCAGGTGAAGGAGTCGTTGTTACAGGATGGGGATCATTTTCTTACAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035861-'5-6,'5-5,6-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.085 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0008921=Trypsin=PU(19.5=74.6)
C2:
PF0008921=Trypsin=FE(38.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGTAAGGTTGATGCTGAGAAGA
R:
ACCTGGTGGAAAAATCTGGGTG
Band lengths:
253-428
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: