BtaEX6031527 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1N633]
Coordinates
chr6:85615946-85618265:-
Coord C1 exon
chr6:85618243-85618265
Coord A exon
chr6:85617171-85617345
Coord C2 exon
chr6:85615946-85616205
Length
175 bp
Sequences
Splice sites
3' ss Seq
ACACTGACTCTTTCTGACAGGCT
3' ss Score
8.06
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
GACCTACCATCACCAGCCCCAGG
Seq A exon
GCTGTGGGAGACGACCAAGGATGTCAGCTACATATGATAGAATCAGGGGTGGATCCACTGCTCAGGAAGGAGAGTGGCCCTGGCAAGCAAGTCTCAAAAAGAATGGCCAGCACTACTGTGGAGCATCTTTGATCAGTGACAGATACCTGTTGACTGCAGCTCACTGCTTTAAAAA
Seq C2 exon
TTCACAAGATCCAAGGAACTATACTGTCACCTTTGGTACCAGAGTAAATCTCCCCTATATGCAACACTATGTTCAGCAAATTTTTATTCATGAAAACTACATCAGGGGTGAACTTCATGATGACATTGCAGTTATATTGCTTACTGAAAAAGTTTTATTTAAGAACGATGTCCATTCAGTTTGTCTTCCTGAAGCCACACAGATTTTTCCACCAGGTGAAGGAGTTGTTGTCACAGGATGGGGAGCACTTTCATATGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038520-'32-33,'32-32,34-33=AN
Average complexity
A_C2
Mappability confidence:
88%=80=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.778 A=0.254 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0008921=Trypsin=PU(19.5=74.6)
C2:
PF0008921=Trypsin=FE(38.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCTACCATCACCAGCCCC
R:
ACAACTCCTTCACCTGGTGGA
Band lengths:
251-426
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]