RnoEX6042063 @ rn6
Exon Skipping
Gene
ENSRNOG00000002002 | Tmprss11b
Description
transmembrane serine protease 11B [Source:RGD Symbol;Acc:1303278]
Coordinates
chr14:24105526-24107473:-
Coord C1 exon
chr14:24107435-24107473
Coord A exon
chr14:24106751-24106925
Coord C2 exon
chr14:24105526-24105785
Length
175 bp
Sequences
Splice sites
3' ss Seq
CAAACCGACTACCTCTGAAGGCT
3' ss Score
2.43
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
AAATCACTAAAGTTGATGCTGAGAAGATTATCAACAACC
Seq A exon
GCTGCGGGAGACGGCCAAGAATGTCGGCAACCTATGACAGAATCACGGGAGGCTCCACGGCTCAGAAAGGAGAATGGCCTTGGCAAGCGAGTCTCAGGGTGAATGGCAAACACCACTGTGGAGCATCTCTCATTGGCGAAAGATTCCTGCTAACAGCAGCGCATTGCTTTCTAAG
Seq C2 exon
GACAAATAATCCAAAGAACTTAACTGTTAGCTTTGGCACTAGAGTAACTCCAGCCTACATGCAGCATTATGTTGAAGAAGTTATTATCCATGAAGATTATGTTAAGGGGCAGCATCATGATGATGTCGCAATTATAAAGCTCACTGAAAAAGTTTCATTCAGGAATGACGTACATCGGGTTTGCCTCCCGGAAGCCACACAGGTTTTCCCACCAGGGGAAGGGGTCGTTGTTACAGGATGGGGATCACTTTCTTACAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002002-'6-6,'6-5,7-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.085 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0008921=Trypsin=PU(19.5=74.6)
C2:
PF0008921=Trypsin=FE(38.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACTAAAGTTGATGCTGAGAAGA
R:
TGGGAAAACCTGTGTGGCTTC
Band lengths:
247-422
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]