MmuEX6018486 @ mm9
Exon Skipping
Gene
ENSMUSG00000035861 | Tmprss11bnl
Description
transmembrane protease, serine 11b N terminal like [Source:MGI Symbol;Acc:MGI:2442893]
Coordinates
chr5:87086659-87091458:-
Coord C1 exon
chr5:87091199-87091458
Coord A exon
chr5:87090568-87090710
Coord C2 exon
chr5:87086659-87089651
Length
143 bp
Sequences
Splice sites
3' ss Seq
GACATGTTGGTCTCCTTTAGGTA
3' ss Score
9.37
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
GACAAATAATCCAAAAAACTTAACTGTCAGCTTTGGCACTAGAGTAACTCCAGCCTACATGCAGCATTCTGTTCAAGAGATTATTATTCATGAAGATTATGTGAAGGGGGAACATCATGATGACGTTGCAGTTATAAAGCTCACTGAAAAAGTTTCATTCAATAATGATGTGCATCGGGTTTGTCTTCCGGAATCCACCCAGATTTTTCCACCAGGTGAAGGAGTCGTTGTTACAGGATGGGGATCATTTTCTTACAATG
Seq A exon
GTAAATCCCCACTGTTACTTCAGAAAGCATCCATTAAAATCATTGACACAAATACTTGCAATTCAGAAGAAGCTTATGGAGGCAGGATAGTGGACACAATGCTCTGTGCTGGCTACTTGGAAGGCAGTATCGATGCTTGCCAG
Seq C2 exon
GGTGACTCTGGAGGACCACTAGTTCATCCCAATTCTCGAGATATTTGGTACCTTGTTGGGATAGTGAGCTGGGGGCATGAATGTGGCAGAGTCAACAAGCCAGGGGTCTATATGAGAGTAACTTCCTACCGTAACTGGATTGCCTCCAAGACTGGTATCTAGTAGAAAATCATCTTTTAATAATGAATGCAGATCATATCGCCTGGTACGATATCACTGAACATCCAATTCTTTATTCTTTCCCGTTGTATATGTGTGTGTCTCTGTGTGTTTTTGCATGTGTGTGGGTAAATGTGTGTTTGTGCTTATATATGTAAGTGTGCCTGTAAGTAGATGCATAAGCTGTTGTTAAGAATCATCCTCAACAATTTCACTGAGACAGGGTAATGGTCAAACCAAGAGCTCTCAGAAATATACTGTCTTACAACTCATGCTGCTGTTAGAACCGGCTATTTCTGTCTTCTAAGGATGGAAGTATAGACAGGCTTGTATGCCCATCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035861-'7-8,'7-7,8-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(38.5=100)
A:
PF0008921=Trypsin=FE(20.8=100)
C2:
PF0008921=Trypsin=PD(20.4=85.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGGAACATCATGATGACGT
R:
TGACTCTGCCACATTCATGCC
Band lengths:
249-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: