GgaEX1002665 @ galGal4
Exon Skipping
Description
NA
Coordinates
chr4:51120507-51122315:-
Coord C1 exon
chr4:51122050-51122315
Coord A exon
chr4:51121088-51121230
Coord C2 exon
chr4:51120507-51120668
Length
143 bp
Sequences
Splice sites
3' ss Seq
AATATTACTTTTCCTTCTAGGCC
3' ss Score
9.46
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
AGAAAGAGAACCTCGGAGATGGACTGCCAGCTTTGGAACTCTGTTGAGACCTCCAAAACAGAGAAAATATGTCCGAAGAATTATCATTCATGAAAAATACGATGGCTTTGTCCCTGATCATGAGTATGATATAGCTCTTGTGGAACTTGCCTCCTCTATTGAGTTCACAAGTGATGTGCACAGTGTCTGTCTTCCTGAAGCATCTTACATATTACGGGATAATACTTCCTGTTTTGTCTCAGGTTGGGGAGCTTTGAAGAATGATG
Seq A exon
GCCCTAGTGTTAATCAGCTTCGACAAGCAGAAGTAAAAATTATTAGCACTGCGGTTTGTAATAGACCACAAGTGTATGCTGGAGCAATAACACCAGGAATGTTGTGTGCTGGATACTTAGAGGGACGGGTGGATGCTTGCCAG
Seq C2 exon
GGTGATTCTGGTGGGCCACTGGTTCATGCAAATTCCAGAGGAATCTGGTATCTCGTGGGAATAGTGAGCTGGGGTGATGAATGTGGCAAGGCTGATAAACCAGGAGTGTACACACGAGTGACTGCATATCGAGACTGGATCGCTTCCAAAACAGGCATCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011792-'12-13,'12-12,13-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(39.0=100)
A:
PF0008921=Trypsin=FE(20.6=100)
C2:
PF0008921=Trypsin=PD(20.2=85.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGATGGCTTTGTCCCTGATC
R:
CCACATTCATCACCCCAGCTC
Band lengths:
254-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]