BtaEX6031516 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004412 | TMPRSS11F
Description
transmembrane protease, serine 11F [Source:HGNC Symbol;Acc:HGNC:29994]
Coordinates
chr6:85473854-85481872:-
Coord C1 exon
chr6:85481613-85481872
Coord A exon
chr6:85480371-85480525
Coord C2 exon
chr6:85473854-85474012
Length
155 bp
Sequences
Splice sites
3' ss Seq
GTGTTTTGTTTTTTCTTTTGTTT
3' ss Score
1.23
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
AAATAAAGACCCAAATAGATGGATCGTTACTTTTGGTATAACTATAACACCACCTGCAGTGAAACGAAGTTTGAGGAAAATTATCATTCATGAAAATTACCGTAAAGAAACAAATGAAAATGACATTGCTTTGGCTCAGCTTGATACCCGAGTTGAGTTTTCAAATGTAGTTCAGAGAGTTTGCCTCCCAGATTCATCCATAAAGTTGCCACCTAAAACAGGTGTATTTGTCACAGGATTTGGATCCATTGTAGATGATG
Seq A exon
TTTGGGTAATAGGACCAACACAAAATAAACTACGGCAAGCCAGGGTAGAAACCATAAGCACTGAGGTGTGTAACAGAAAGGATGTATATGATGGCATGATAACTTCAGGAATGTTGTGTGCCGGATTCATGGAAGGAAAAGTAGATGCATGTAAG
Seq C2 exon
GGAGATTCTGGTGGACCTCTGGTTTATGATAATCATGAAATCTGGTACCTAGTTGGTATAGTAAGTTGGGGACAATCTTGTGCTCTTCCCAAAAAACCTGGCGTCTACACAAGAGTGTCTCAGTATCGAAACTGGATTGCCTCCAAGACTGGTATCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004412-'6-7,'6-6,7-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(37.7=100)
A:
PF0008921=Trypsin=FE(22.1=100)
C2:
PF0008921=Trypsin=PD(19.5=84.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACATTGCTTTGGCTCAGCT
R:
ACTCTTGTGTAGACGCCAGGT
Band lengths:
256-411
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]