Special

GgaEX7003886 @ galGal4

Exon Skipping

Description
NA
Coordinates
chr4:51072179-51074797:-
Coord C1 exon
chr4:51074538-51074797
Coord A exon
chr4:51073651-51073793
Coord C2 exon
chr4:51072179-51072372
Length
143 bp
Sequences
Splice sites
3' ss Seq
TCAACTATTCTTTCCCTCAGGTC
3' ss Score
10.42
5' ss Seq
CAGGTAACC
5' ss Score
8.66
Exon sequences
Seq C1 exon
AATGAGTCACCCTCACAAGTGGACTGCTACTTTTGGAGCTCTTTTGAAGCCACCAACTTTGAAACGATCAGTCAAGACCATTATTATTCACGAAATGTACCGCTACCCAGAACACGATTATGACATTGCACTTGTGAAGCTCTCTAAACAAGTTGAGTTTACAAGTAACATACACCGCGTTTGTCTGCCTGAGCCATCTCAGACTTTTCCATATAATATTTATGCTGTCATCACAGGCTGGGGAGCGCTTACCAATGATG
Seq A exon
GTCCGACTCCTAATGCTCTTCAGGAAGCAACAGTGAAACTTATCGACTCAGACACTTGCAACAGAAAAGAAGTGTATGATGGGGACATAACACCTAGGATGTTGTGTGCTGGGTACTTGGAAGGAGGAGTAGATGCTTGTCAG
Seq C2 exon
GGAGACTCTGGGGGACCGCTGGTTACTCCAGATTCTAGACTGATGTGGTACCTCGTGGGAATAGTGAGCTGGGGAGATGAATGTGCCAAGCCAAACAAACCTGGAGTTTACACACGAGTGACTTATTTCCGTGACTGGATTACCTCAAAAACTGGCATCTAATTCCAAAATCAAAAATGGATATAATTACATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026134-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact

ORF disruption upon sequence exclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=0.042 C2=0.019
Domain overlap (PFAM):

C1:
PF0008921=Trypsin=PU(46.6=95.4)
A:
PF0008921=Trypsin=FE(26.4=100)
C2:
PF0008921=Trypsin=PD(25.8=85.2)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Primers PCR
Suggestions for RT-PCR validation
F:
TACCGCTACCCAGAACACGAT
R:
TGGCTTGGCACATTCATCTCC
Band lengths:
256-399
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]