RnoEX6042000 @ rn6
Exon Skipping
Gene
ENSRNOG00000046764 | Tmprss11a
Description
transmembrane serine protease 11A [Source:RGD Symbol;Acc:1596322]
Coordinates
chr14:23275988-23283092:+
Coord C1 exon
chr14:23275988-23276247
Coord A exon
chr14:23281056-23281198
Coord C2 exon
chr14:23282934-23283092
Length
143 bp
Sequences
Splice sites
3' ss Seq
GTTTTTGTTTCTTCTCTAAGGGG
3' ss Score
7.39
5' ss Seq
AGGGTAGGT
5' ss Score
8.1
Exon sequences
Seq C1 exon
CAATGCAAACCCTCGCCAATGGACTCTTAGCTTTGGAACAACAATAAATCCTCCCTTAATGAAAAGAGAAGTCAGAAGAATTATTATGCATGAGAAGTATCGCCCTCCAGCCAGAGACCACGACATCGCTCTTGTGCAGTTTTCTCCCAGAGTCACCTTTTCAGATGAAGTACGCCGAATTTGTTTGCCAGAACCCTCTGCCTCGTTCCCACCAAATTCAACTGTCTACATCACAGGATTCGGAGCACTTTACTATGGTG
Seq A exon
GGGAGTCCCAAAATGAGCTCCGTGAAGCCAGAGTACAAATCATAAGCAACGACGTGTGCAAGCAGCGACATGTGTACGGCAATGAAATAAAACGCGGGATGTTCTGTGCTGGATTTCTGGAAGGAATTTACGATGCCTGCAGG
Seq C2 exon
GGTGATTCTGGGGGCCCATTGGTTGTAAGAGACGACAAAGATACCTGGTATCTCATTGGAATTGTGAGCTGGGGAGACAACTGTGGTCAAAAGAACAAGCCTGGGGTGTACACTCAAGTGACTTATTACCGACGCTGGATTGCTTCAAAAACGGGTCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000046764-'6-8,'6-7,7-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(38.5=100)
A:
PF0008921=Trypsin=FE(20.8=100)
C2:
PF0008921=Trypsin=PD(20.4=86.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATGAGAAGTATCGCCCTCC
R:
TCTCCCCAGCTCACAATTCCA
Band lengths:
250-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]