BtaEX6031504 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020298 | TMPRSS11A
Description
transmembrane protease, serine 11A [Source:HGNC Symbol;Acc:HGNC:27954]
Coordinates
chr6:85337482-85344396:-
Coord C1 exon
chr6:85344137-85344396
Coord A exon
chr6:85339539-85339681
Coord C2 exon
chr6:85337482-85337643
Length
143 bp
Sequences
Splice sites
3' ss Seq
TTACTTTGCTTTTCCTTAAGGGG
3' ss Score
7
5' ss Seq
AGGGTAAGC
5' ss Score
9.04
Exon sequences
Seq C1 exon
TAAAGAAAACCCACATCAGTGGACTGTTAGCTTTGGAACAAAAATCAACCCTCCATTAATGAAAAGAAACATCAAAAGAATTATCGTCCATGAGAGGTACAGCTCCCCAGCAAGAGAGTACGACATTGCTGTTGTGCAGTTCTCTCCCAGAGTCTCCTTTACTGATGACATCCGTCGAATTTGTTTGCCAGAAGCCTCTGCGTCCTTCCAACCAAATTCAACTGTCTATATCACAGGATTTGGAGCACTTTTTTATGGTG
Seq A exon
GGGAATCCCAAAATGATCTTCGAGAAGCCAGACTGAAAATCATAAGTGATGATGTGTGCAAGCAGCCACATGTGTATGGCAGTGATATAAAATTTGGAATGATGTGTGCTGGATATCTGGAAGGAATATATGATGCCTGCAGG
Seq C2 exon
GGTGATTCTGGGGGACCTTTAGTTGGAAAGGACTTTAAAGATACCTGGTATCTCATTGGAATTGTGAGCTGGGGAGATAACTGTGGTCAAAGGAACAAACCTGGAGTTTACACAAAAGTGACTTATTACCGAAACTGGATTGCTTCAAAAACAGGCCTCTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020298-'9-9,'9-8,10-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(38.5=100)
A:
PF0008921=Trypsin=FE(20.8=100)
C2:
PF0008921=Trypsin=PD(20.4=85.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGAGAGGTACAGCTCCCCA
R:
TCTCCCCAGCTCACAATTCCA
Band lengths:
249-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]