DreEX0055996 @ danRer10
Exon Skipping
Gene
ENSDARG00000062707 | plat
Description
plasminogen activator, tissue [Source:ZFIN;Acc:ZDB-GENE-081104-181]
Coordinates
chr8:2202369-2206897:-
Coord C1 exon
chr8:2206757-2206897
Coord A exon
chr8:2204070-2204218
Coord C2 exon
chr8:2202369-2202669
Length
149 bp
Sequences
Splice sites
3' ss Seq
GACCTGCTCCTCTCTCTCAGTTT
3' ss Score
9.11
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
CTCTGCTCAAGCTGAAGAGTGAGTCTGGGATCTGCGCGGTTCACTCTCCTGAAGTTCTGCCCGCATGTTTACCAGAACCTAACCTGGTTTTACCAGACTGGACAGAGTGTGAGATCTCTGGTTATGGAAAAGAGGAAGAGT
Seq A exon
TTTCTCCGTTTTACTCAGAGAGGATCAAGCGTGGTCTGGTGCGTCTGTGGCCGCAGGATCAGTGTGTCCCTGAAAAACTGTCTGGTCGACTGGTCACCTCAAACATGCTGTGCGCTGGAGACACCCGAGGGCTGGACGATGCCTGCAAG
Seq C2 exon
GGGGATTCTGGTGGTCCTCTGGTGTGTCAGAAGAACGGCAGGATGACTCTGATGGGTTTGATCAGCTGGGGCGACGGCTGTGGGAAAAAGGACACGCCTGGAGTTTACACACGCGTCACCAAATACACAAATTGGATCTCCAGCAAGATGAGCGCAAACTAAGACAAGCGCAGACAGAAAGTCATGTGCTGGAGGAAAAAACATCACATTCACCAACCTGCTGGAGTGTTTGTGACTGAAGGAGGACAACATCTGAGAGTTTGTGAGTTTTTGCACACCGGACTGCACATCTGAATCCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062707_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(19.6=100)
A:
PF0008921=Trypsin=FE(20.4=100)
C2:
PF0008921=Trypsin=PD(18.8=83.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGTTCTGCCCGCATGTTT
R:
CGCTCATCTTGCTGGAGATCC
Band lengths:
246-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]