BtaEX6107213 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000001244 | PLAT
Description
Bos taurus plasminogen activator, tissue (PLAT), mRNA. [Source:RefSeq mRNA;Acc:NM_174146]
Coordinates
chr27:36738833-36742724:-
Coord C1 exon
chr27:36742584-36742724
Coord A exon
chr27:36741224-36741390
Coord C2 exon
chr27:36738833-36739667
Length
167 bp
Sequences
Splice sites
3' ss Seq
GTCTTCCTGTTCTCTTTCAGCTT
3' ss Score
12.06
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
CGCTGCTGCACCTGAAATCAGACTCGCTGACCTGCGCCCGGGAGAGTGCCTCTGTCCGCACCATCTGCCTCCCAGACGCCAGCCTGCAGCTGCCCGACTGGACGGAGTGCGAGCTGTCCGGCTACGGGAAACACGAGTCCT
Seq A exon
CTTCTCCGTTCTTTTCCGAGCGGCTGAAGGAGGCTCACGTCAGGTTGTACCCATCCAGCCGCTGCACTTCCCAACACTTGTTTAACAGGACCGTCACCAACAACATGCTGTGTGCCGGAGACACACGGAGCGGTGGGGACCACACAAACCTGCACGATGCCTGCCAG
Seq C2 exon
GGTGACTCGGGCGGCCCCCTGGTGTGTATGAAGGACAACCACATGACCTTGGTCGGCATCATCAGCTGGGGCCTGGGCTGCGGGCGGAAGGACGTCCCGGGCGTGTACACCAAGGTGACTAACTACCTGGACTGGATCCGAGACAACACTCGCCCATGACCAGGGACACCTGTTTCCCACTACGTCACAGAGACCCCGCTTCTCCCACCTCTGAAGACTCACCACGGCAGGGCCTTCTTCACACAGCGGAAGTTGGGGGAGGGTGTAGTTTCACAGGTACTTTTCCATTTTGGAAGTTTTCAGGGCTTAAGGGCTGAACTGTACTGTCAGACGGGAAGATGGATAAATGCCAGTCCCTCGTGGAAAACCACTCCCCAGGGCGGAAGCCCGCTTCCTCCTCTATGCACACGAGCGTCTTTGGAAAGGGGACCACAAAGATGAAAGCATGTCTCAGTAGGCAAAGATAACTCGAGCCTTCGGGAAAGAAGGGTTAGACGTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001244-'18-15,'18-14,19-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.089 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(19.1=100)
A:
PF0008921=Trypsin=FE(22.4=100)
C2:
PF0008921=Trypsin=PD(18.3=84.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCACCTGAAATCAGACTCGC
R:
TAGTCACCTTGGTGTACACGC
Band lengths:
256-423
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]