RnoEX6055961 @ rn6
Exon Skipping
Gene
ENSRNOG00000019018 | Plat
Description
plasminogen activator, tissue type [Source:RGD Symbol;Acc:3342]
Coordinates
chr16:74098260-74103938:-
Coord C1 exon
chr16:74103798-74103938
Coord A exon
chr16:74101076-74101239
Coord C2 exon
chr16:74098260-74099158
Length
164 bp
Sequences
Splice sites
3' ss Seq
GCCTAATTGTTCTCTTTCAGCCT
3' ss Score
8.55
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
CATTACTGCAGCTGAGGTCAGATTCCAGTCAGTGTGCCCAGGAGAGCAGTTCTGTCGGCACTGCCTGCCTCCCTGACCCCGACGTACAGCTTCCTGACTGGACAGAGTGTGAGCTTTCTGGCTACGGCAAGCATGAGGCAT
Seq A exon
CCTCTCCTTTCTTCTCTGACCGGCTGAAGGAGGCTCACGTCAGACTGTATCCGTCCAGCCGCTGTACCTCACAGCATCTGTTTAACAAAACCATCACGAGCAACATGCTGTGTGCAGGAGACACCCGAACTGGGGGCAACCAAGACGTCCATGACGCGTGCCAG
Seq C2 exon
GGTGACTCAGGAGGCCCTCTGGTGTGCATGATCGATAAGCGGATGACTTTACTGGGCATCATCAGCTGGGGCCTCGGCTGTGGGCAGAAGGACGTGCCAGGGATATACACAAAGGTCACTAATTACCTGAACTGGATCCAAGACAACATGAAGCAATGACAAAGAAAGCCCAGCTCCTTAAACCCAGAGGACCTGCCTTCCTCTTCCTCTTCCACAGAAGATACGCCTGAAAGGCCAAGCGTTCTTCGCAGGCTCGTCCTCCTGAGCTGCCGCTCAGCAGAGGGAGTGACAGTCTTTAGGCACAGACAGAGTTTACTTTGTGACAGGTACTTCACAAACTTGTACGTTTTAAGGGTGAAGGTCTGACTTTAGAATCAGTTCTGTCAGATGAGATGACAGGGAAATGCCAACCTTCCTATAACTCTAAGATTTTAAAAAGAGAAGTAGACCAAAGTCCACCCTTCCTGGACCACTATTTTGTACACTGAACCACAAGATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019018-'27-26,'27-22,29-26=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.127 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(19.2=100)
A:
PF0008921=Trypsin=FE(22.0=100)
C2:
PF0008921=Trypsin=PD(18.4=84.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACTGGACAGAGTGTGAGCT
R:
AGAGGAAGAGGAAGGCAGGTC
Band lengths:
257-421
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]