GgaEX6024778 @ galGal3
Exon Skipping
Gene
ENSGALG00000003709 | E1C209_CHICK
Description
NA
Coordinates
chr22:2758566-2761918:-
Coord C1 exon
chr22:2761778-2761918
Coord A exon
chr22:2760049-2760197
Coord C2 exon
chr22:2758566-2759272
Length
149 bp
Sequences
Splice sites
3' ss Seq
TATATTCACATCCCTTTCAGTTT
3' ss Score
8.03
5' ss Seq
AAGGTAAAC
5' ss Score
8.14
Exon sequences
Seq C1 exon
CTCTGCTGCAGTTGAACTCGGACACAGAAGACTGTGCTATTGAAACAGACACTGTTCGAGCAGCCTGCCTCCCAACACCTGACCTGCAGCTGCCTGACTGGACTGAATGTGAGATCTCTGGTTATGGTAGAAACGAAGAAT
Seq A exon
TTTCTCCCTTTTATTCAGAGCACCTGAAGGTAGGCCACGTCAGACTATTTCCAGCCAGTCGGTGCACCACACAGCATCTACACAACCGGACAGTTACAGACAACATGTTATGTGCAGGAGACACAAGGCACCTTGATGATGCTTGTAAG
Seq C2 exon
GGTGACTCTGGAGGGCCTTTGGTTTGCATGAAGGATGATCGCATGCATCTAATAGGAATCATCAGCTGGGGAATAGGCTGCGGCCACAAAGGCATACCTGGTGTTTATACAAATGTGAACCGTTATCTTAACTGGATTCAGAACAACATGAAACCCTGAAGAAGAAAGTACCTCTCCACACACAATCCCATGAGTGTGCCCTTACAACTTGCTTTGAGGTGTTTCAAGGATATTGACAGGGCATCCTATCTGTCCAGATGCTTATGACTTTCAGTATAAAAGGAAGACATACTACTGTGTGTGGTATGGGCAATTTCTCTGAGTACTCCACTTTTCTCACTTCAGGTTATCACAATCTAAGAGCTCTTTCCCTATGCATCTCCAAATTTTCTCCTTTAATCAAATCACACGGGTAGAACTAAAACTAAATCTTGGCTTGCAAAATGTGAGCTATGTTGTTTTGGACTTAAGGCAAAGGAGACAGATTTTGTTTCCTTAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003709-'10-14,'10-12,11-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(19.6=100)
A:
PF0008921=Trypsin=FE(20.4=100)
C2:
PF0008921=Trypsin=PD(18.8=84.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGCCTGACTGGACTGAATG
R:
TGGGATTGTGTGTGGAGAGGT
Band lengths:
243-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]