MmuEX0048162 @ mm9
Exon Skipping
Gene
ENSMUSG00000072845 | Tmprss11a
Description
transmembrane protease, serine 11a [Source:MGI Symbol;Acc:MGI:2684853]
Coordinates
chr5:86839435-86849286:-
Coord C1 exon
chr5:86849027-86849286
Coord A exon
chr5:86843502-86843644
Coord C2 exon
chr5:86839435-86840948
Length
143 bp
Sequences
Splice sites
3' ss Seq
CTCTTTTTTTTCCCATTAAGGGG
3' ss Score
8.25
5' ss Seq
AGGGTAGGT
5' ss Score
8.1
Exon sequences
Seq C1 exon
CAATTCAAACCCTCGCCAATGGACTCTTAGTTTTGGAACAACAATAAATCCTCCCTTAATGAAAAGAGACGTCAGAAGAATTATTATGCATGAAAGGTATCGTCCCCCAGCAAGAGACCATGACATTGCTCTAGTGCAGTTTTCTCCCAGAGTCACCTTTTCGGATGAAGTGCGCCGAATTTGTTTGCCAGAACCCTCTGCATCTTTCCCACCAAATTCAACTGTCTACATCACAGGATTCGGAGCACTTTACTATGGCG
Seq A exon
GGGAATCCCAAAATGAGCTCCGTGAAGCCAGAGTACAAATCATAAGCAATGACATCTGCAAGAAGCGACACGTGTATGGCAATGAAATAAAACGTGGGATGTTCTGTGCTGGATTTCTGGAAGGAAATTACGATGCCTGCAGG
Seq C2 exon
GGTGATTCTGGGGGACCATTGGTTATAAGAGACAACAAAGATACCTGGTATCTCATTGGAATTGTGAGCTGGGGAGACAACTGTGGTCAAAAGAACAAGCCTGGGGTGTACACACAAGTGACTTATTACCGACACTGGATTGCTTCGAAAACGGGTCTCTAACTCGCTACAGATAGATGTTAAAGAAAACCGTAGCGTGTCGGTTATATGCATGTAAGAATTCAGACATCCATTTGGTGGCATTGGCACAATGAAATGAGATTAAATGGCTGGACCTAGCAATGTGAAACACATGATTTATTTCAGAATCGCATATTTGTGAAGGTGTAGGCTGATTTATCATTGAAAAATGCAGTAAAGATCCTTCATCTCTTTAAAGCAAGGGTGCATGGGATGCATTATGTGGTTTTACAGATGGCCTGGGAGAGTTTTAGAATGTGTTTTTTCTGGGTACCCTTCAAGTAAAAAACGCTTTGAATCTTCAGAGACGTCAAGGTGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000072845-'7-7,'7-6,8-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(38.5=100)
A:
PF0008921=Trypsin=FE(20.8=100)
C2:
PF0008921=Trypsin=PD(20.4=85.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATGAAGTGCGCCGAATTTG
R:
TTCGAAGCAATCCAGTGTCGG
Band lengths:
247-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: