HsaEX6084594 @ hg38
Exon Skipping
Gene
ENSG00000187054 | TMPRSS11A
Description
transmembrane protease, serine 11A [Source:HGNC Symbol;Acc:HGNC:27954]
Coordinates
chr4:67909385-67919232:-
Coord C1 exon
chr4:67918973-67919232
Coord A exon
chr4:67914588-67914730
Coord C2 exon
chr4:67909385-67911503
Length
143 bp
Sequences
Splice sites
3' ss Seq
TAACTCTATTTTTCCTTAAGGGG
3' ss Score
6.05
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
Exon sequences
Seq C1 exon
GTATAAAAATCCACATCAATGGACTGTTAGTTTTGGAACAAAAATCAACCCTCCCTTAATGAAAAGAAATGTCAGAAGATTTATTATCCATGAGAAGTACCGCTCTGCAGCAAGAGAGTACGACATTGCTGTTGTGCAGGTCTCTTCCAGAGTCACCTTTTCGGATGACATACGCCAGATTTGTTTGCCAGAAGCCTCTGCATCCTTCCAACCAAATTTGACTGTCCACATCACAGGATTTGGAGCACTTTACTATGGTG
Seq A exon
GGGAATCCCAAAATGATCTCCGAGAAGCCAGAGTGAAAATCATAAGTGATGATGTCTGCAAGCAACCACAGGTGTATGGCAATGATATAAAACCTGGAATGTTCTGTGCCGGATATATGGAAGGAATTTATGATGCCTGCAGG
Seq C2 exon
GGTGATTCTGGGGGACCTTTAGTCACAAGGGATCTGAAAGATACGTGGTATCTCATTGGAATTGTAAGCTGGGGAGATAACTGTGGTCAAAAGGACAAGCCTGGAGTCTACACACAAGTGACTTATTACCGAAACTGGATTGCTTCAAAAACAGGCATCTAATTCACGATAAAAGTTAAACAAAGAAAGCTGTATGCAGGTCATATATGCATGAGAATTCAACTATTTAGTGGGTGTAGTACAACAAAGTGATATTAAATTACTGGATCTAGTAACATGAAACACACAACGTAAGTTATTTAGAATCACTTTAATCAACCAATAATCCTTAGCCAATTTATAAGGGACTTTTATTTGTAAAGTAATGGATCTGGCTTGAAAAATACGGTAGAGATACTTAGCTCTTTAAATCACGAATGTTGAAGTACCAGTGAGACTCAATACATATTTTTGAAGATAGTCCATGGGATTTTTAGAATGTCGTTGTCAAGGGTCTCCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187054-'12-12,'12-11,14-12=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(38.5=100)
A:
PF0008921=Trypsin=FE(20.8=100)
C2:
PF0008921=Trypsin=PD(20.4=85.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATTGCTGTTGTGCAGGTCT
R:
CCAGGCTTGTCCTTTTGACCA
Band lengths:
242-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains