HsaEX6084602 @ hg38
Exon Skipping
Gene
ENSG00000198092 | TMPRSS11F
Description
transmembrane protease, serine 11F [Source:HGNC Symbol;Acc:HGNC:29994]
Coordinates
chr4:68053198-68064944:-
Coord C1 exon
chr4:68064685-68064944
Coord A exon
chr4:68059326-68059468
Coord C2 exon
chr4:68053198-68054067
Length
143 bp
Sequences
Splice sites
3' ss Seq
TTTATCCATTTGTGCAATAGGAC
3' ss Score
7.86
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
AAATAAAGACCCAACTCAATGGATTGCTACTTTTGGTGCAACTATAACACCACCCGCAGTGAAACGAAATGTGAGGAAAATTATTCTTCATGAGAATTACCATAGAGAAACAAATGAAAATGACATTGCTTTGGTTCAGCTCTCTACTGGAGTTGAGTTTTCAAATATAGTCCAGAGAGTTTGCCTCCCAGACTCATCTATAAAGTTGCCACCTAAAACAAGTGTGTTCGTCACAGGATTTGGATCCATTGTAGATGATG
Seq A exon
GACCTATACAAAATACACTTCGGCAAGCCAGAGTGGAAACCATAAGCACTGATGTGTGTAACAGAAAGGATGTGTATGATGGCCTGATAACTCCAGGAATGTTATGTGCTGGATTCATGGAAGGAAAAATAGATGCATGTAAG
Seq C2 exon
GGAGATTCTGGTGGACCTCTGGTTTATGATAATCATGACATCTGGTACATTGTAGGTATAGTAAGTTGGGGACAATCATGTGCACTTCCCAAAAAACCTGGAGTCTACACCAGAGTAACTAAGTATCGAGATTGGATTGCCTCAAAGACTGGTATGTAGTGTGGATTGCCCATGAGTTATACACATGGCACACAGAGCTGATACTCCTGCGTATTTTGTATTGTTTAAATTCATTTACTTTGGATTAGTGCTTTTGCTAGATGTCAAGAAGCCCTTCAGACCCAGACAAATCTAATATCCTGAGGTGGCCTTTACATACGTAGGACCAAACCCTCTCTACCATGAGGGAAGAAGACACAGCAAATGACAGACAGCACCTATTCCTTACTCACAAGGGAAACTGCTTGTGATACTTCCTAATAAGATAAATAAGTGGTTTCCCTCAATTGAAGACAGGAACATCATTTTCCACAGGATATGAAGAGCTGCCAGTAATGCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198092-'11-13,'11-12,13-13=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(38.3=100)
A:
PF0008921=Trypsin=FE(20.7=100)
C2:
PF0008921=Trypsin=PD(19.8=84.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAACTATAACACCACCCGCA
R:
ACCAGAGGTCCACCAGAATCT
Band lengths:
246-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains