HsaEX6084602 @ hg19
Exon Skipping
Gene
ENSG00000198092 | TMPRSS11F
Description
transmembrane protease, serine 11F [Source:HGNC Symbol;Acc:29994]
Coordinates
chr4:68918916-68930662:-
Coord C1 exon
chr4:68930403-68930662
Coord A exon
chr4:68925044-68925186
Coord C2 exon
chr4:68918916-68919785
Length
143 bp
Sequences
Splice sites
3' ss Seq
TTTATCCATTTGTGCAATAGGAC
3' ss Score
7.86
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
AAATAAAGACCCAACTCAATGGATTGCTACTTTTGGTGCAACTATAACACCACCCGCAGTGAAACGAAATGTGAGGAAAATTATTCTTCATGAGAATTACCATAGAGAAACAAATGAAAATGACATTGCTTTGGTTCAGCTCTCTACTGGAGTTGAGTTTTCAAATATAGTCCAGAGAGTTTGCCTCCCAGACTCATCTATAAAGTTGCCACCTAAAACAAGTGTGTTCGTCACAGGATTTGGATCCATTGTAGATGATG
Seq A exon
GACCTATACAAAATACACTTCGGCAAGCCAGAGTGGAAACCATAAGCACTGATGTGTGTAACAGAAAGGATGTGTATGATGGCCTGATAACTCCAGGAATGTTATGTGCTGGATTCATGGAAGGAAAAATAGATGCATGTAAG
Seq C2 exon
GGAGATTCTGGTGGACCTCTGGTTTATGATAATCATGACATCTGGTACATTGTAGGTATAGTAAGTTGGGGACAATCATGTGCACTTCCCAAAAAACCTGGAGTCTACACCAGAGTAACTAAGTATCGAGATTGGATTGCCTCAAAGACTGGTATGTAGTGTGGATTGCCCATGAGTTATACACATGGCACACAGAGCTGATACTCCTGCGTATTTTGTATTGTTTAAATTCATTTACTTTGGATTAGTGCTTTTGCTAGATGTCAAGAAGCCCTTCAGACCCAGACAAATCTAATATCCTGAGGTGGCCTTTACATACGTAGGACCAAACCCTCTCTACCATGAGGGAAGAAGACACAGCAAATGACAGACAGCACCTATTCCTTACTCACAAGGGAAACTGCTTGTGATACTTCCTAATAAGATAAATAAGTGGTTTCCCTCAATTGAAGACAGGAACATCATTTTCCACAGGATATGAAGAGCTGCCAGTAATGCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198092-'8-9,'8-8,9-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(38.3=100)
A:
PF0008921=Trypsin=FE(20.7=100)
C2:
PF0008921=Trypsin=PD(19.8=84.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAACTATAACACCACCCGCA
R:
ACCAGAGGTCCACCAGAATCT
Band lengths:
246-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)