RnoEX6042057 @ rn6
Exon Skipping
Gene
ENSRNOG00000002005 | Tmprss11f
Description
transmembrane serine protease 11F [Source:RGD Symbol;Acc:1560675]
Coordinates
chr14:23981219-23990130:-
Coord C1 exon
chr14:23989871-23990130
Coord A exon
chr14:23986821-23986963
Coord C2 exon
chr14:23981219-23983800
Length
143 bp
Sequences
Splice sites
3' ss Seq
TATCCATGTGTATATAATAGGGC
3' ss Score
6.48
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
AAACAGAGACCCAAGTAAATGGATCGCTACCTTCGGTACAACGATTACACCACCGTTAGTCAAACGGAGTGTTGGGAGGATTATCATCCATGAAGAGTACCACAGAGATAGCAATGAGAATGACATTGCTCTAGCTCAGCTAACCAGCCGCGTCGAGTTTTCAAATGTGGTTCAGAGAGTCTGCCTCCCAGATTCGTCTATGAAACTGCCACCAAAAACAAGTGTCTTTGTCACAGGATTTGGGTCTATTGTAGACGATG
Seq A exon
GGCCAACACAAAATAAACTCCGGCAGGCCAGGGTGGAGACCATAGGCTCTGATGTGTGCAACCAAAAGGATGTGTATGACGGCTTGATAACTCCAGGGATGCTGTGCGCTGGATTCATGGAAGGAAAAGTAGATGCTTGTAAG
Seq C2 exon
GGTGATTCTGGTGGACCTTTGGTCTATGACAATCGGGACATCTGGTACATTGTAGGCATAGTAAGTTGGGGGCAATCTTGTGCTCTTCCAAATAAGCCTGGAGTCTACACAAGGGTGTCTAAGTATCGAGACTGGATAGCCTCCAAGACTGGCCTCTAAAGTAGACTGTTGTGAGTGATAGCCACAGACCACAGAGCAGGATACCTGAAGATTGTACAGTATCACGTAGAGTTGTGAGTTATAGCCACAGCCCATGGAGCAGAATGCCTACAGATTGTACATCATGTGCATTATTACTAAGAGTCATCGGGATTGAATGAGTGCTTTTGCCAGATGTCAAGGAACTCTTCAGACCGAGACCAACGTAAGGTCATGAGGTGGCTTTTTGTGTATAAACTTTTACCAAGAAGGAAGAAAATCTGGCAAATAACAGGCAGCACCAGTACCTCACTCACCAAAGTGCCTCGTTAATGTGACAAACACAAACAGCTTCCCTCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002005-'12-13,'12-12,13-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.042 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(38.3=100)
A:
PF0008921=Trypsin=FE(20.7=100)
C2:
PF0008921=Trypsin=PD(19.8=84.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCTAGCTCAGCTAACCAGC
R:
CCCTTGTGTAGACTCCAGGCT
Band lengths:
248-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]